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Genetic mapping software tools | Pool sequencing data analysis

The long-lasting success of forward genetic screens relies on the simple molecular basis of the characterized phenotypes, which are typically caused by mutations in single genes. Mapping the location of causal mutations using genetic crosses has…
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SHOREmap
Desktop

SHOREmap

Supports genome-wide genotyping and candidate-gene sequencing in a single step…

Supports genome-wide genotyping and candidate-gene sequencing in a single step through analysis of deep sequencing data from a large pool of recombinants.

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Barcas
Desktop

Barcas

Permits analysis of multiplexed barcode-seq data. Barcas maps sequenced reads…

Permits analysis of multiplexed barcode-seq data. Barcas maps sequenced reads based on the trie data structure for fast and efficient imperfect matching. It constructs a trie data structure from the…

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SIMPLE
Desktop

SIMPLE SImple Mapping PipeLinE

Simplifies the process of mapping new mutations. SIMPLE uses next generation…

Simplifies the process of mapping new mutations. SIMPLE uses next generation sequencing fastq files to generate tables and plots to show the most likely candidate gene and our locations, with ease…

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MULTIPOOL
Desktop

MULTIPOOL

A computational method for genetic mapping in model organism crosses that are…

A computational method for genetic mapping in model organism crosses that are analyzed by pooled genotyping.

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Mudi
Web

Mudi Mutation discovery

Detects mutations and prioritizes mutation candidates by analyzing genome…

Detects mutations and prioritizes mutation candidates by analyzing genome re-sequencing data. Mudi also annotates the information of mutations such as gene name and amino acid change.

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NGM
Desktop

NGM Next Generation Mapping

Uses a chastity statistic to quantify the relative contribution of the parental…

Uses a chastity statistic to quantify the relative contribution of the parental mutant and mapping lines to each SNP in the pooled F(2) population.

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CloudMap
Desktop

CloudMap

An accessible and cloud-based pipeline which greatly simplifies the analysis of…

An accessible and cloud-based pipeline which greatly simplifies the analysis of mutant genome sequences.

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SNPTrack
Web

SNPTrack

Provides genetic analysis capabilities and captures analysis results in its…

Provides genetic analysis capabilities and captures analysis results in its database as SNP lists that can be cross-linked for biological interpretation to gene/protein annotations, Gene Ontology,…

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