GENETIX pipeline

GENETIX specifications

Information


Unique identifier OMICS_22207
Name GENETIX
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Windows
Computer skills Advanced
Version 4.05
Stability Stable
Maintained Yes

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GENETIX citations

 (5)
2016
PMCID: 5051803

[…] to all samples, to pairs of sample localities and also within and among geographic regions. the statistical significance of observed genetic differentiation was estimated by 10 000 permutations in genetix (version 4.05; [46]). we adopted the fdr approach proposed by benjamini & yukutieli's [47] to correct for multiple tests in pairwise tables., spatial patterns of genetic population […]

2015
PMCID: 4378951

[…] of private alleles (p s) for a standard sample size of 38 individuals, observed (h o) and expected number of heterozygotes (h e), and weir and cockerham’s [33] inbreeding coefficient (f is) using genetix version 4.05.2 [34] and adze version 1.0 [35]. the number of alleles for a standard sample size was calculated using a rarefaction approach using adze; allele frequencies for each locus […]

2011
PMCID: 3211011

[…] detect and characterize any kind of hybrid between the four sturgeon species considered, a four-step method has been tested., step 1. allelic frequencies of pure species samples were calculated with genetix software [33] and the occurrence of species-specific alleles was recorded., step 2. a factorial correspondences analysis (fca) was done with genetix in order to investigate the relationships […]

2010
PMCID: 2876113

[…] among all samples, a njtree dendrogram was constructed with the software mega 3.1 [35] from a chord distance matrix (noted dc-s&e) [36], as recommended by [37], and computed using genetix v4 [38]., effective population sizes were computed with three methods. estim 1.2 [39] uses the connection between migration and effective population size with heterozygosity and linkage […]

2008
PMCID: 2587696

[…] filipino, vietnamese and cha subjects using 128 continental aims [31]. samples were also filtered for possible cryptic relationships using the plink program [32]., fst and fis was determined using genetix software[33] that applies the weir and cockerham algorithm[34]. a measure of informativeness for each snp (in) was determined using an algorithm previously described [35]. hardy-weinberg […]

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