GeneTrail protocols

GeneTrail specifications

Information


Unique identifier OMICS_02236
Name GeneTrail
Interface Web user interface, Application programming interface
Restrictions to use None
Input data GeneTrail is able to read various input file formats through which the user can provide measurement data or categories that should be analyzed. In general, GeneTrail2 will try to automatically detect type of the uploaded data. GeneTrail accepts the following simple, tab-delimited text files as inputs: identifier lists, score lists, and data matrices. More information: https://genetrail2.bioinf.uni-sb.de/help?topic=input_data
Computer skills Basic
Version 2.1.4
Stability Stable
Maintained Yes

Maintainer


  • person_outline Daniel Stöckel <>

Publications for GeneTrail

GeneTrail IN pipelines

 (2)
2018
PMCID: 5906602
PMID: 29670130
DOI: 10.1038/s41598-018-24425-9

[…] and venn diagram function in r-studio employing differentially expressed pre-ranked genes which were associated with extracellular secretory function as classified using topgo r-studio package and genetrail2. the principle component analysis (pca) based on regularized log transformed fpkm values with an adjusted p-value < 0.05. obtained from deseq. 2 and was carried out using ggfortify […]

2009
PMCID: 2743716
PMID: 19712482
DOI: 10.1186/1471-2164-10-404

[…] map (som) algorithm [23], and visualized using java treeview [91]. the data files for each array are publicly available at the gene expression omnibus (geo) database repository (gse 16803)., the genetrail software program [17,18] was used to identify gene ontology (go) and kyoto encyclopedia of genes and genomes (kegg) categories enriched in specified subsets of the data [20,92]., […]

GeneTrail institution(s)
Center for Bioinformatics, Saarland University, Saarbrücken, Germany; Center for Bioinformatics, Eberhard-Karls-University, Tübingen, Germany; Department of Human Genetics, Medical School, Saarland University, Homburg, Germany; Theodor-Boveri-Institute/Biocenter, Developmental Biochemistry, and Comprehensive Cancer Center Mainfranken, Würzburg University, Würzburg, Germany; Department of Pediatric Oncology and Hematology, Medical School, Saarland University, Homburg, Germany

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