Genevar statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool Genevar
info

Tool usage distribution map

This map represents all the scientific publications referring to Genevar per scientific context
info info

Associated diseases

This word cloud represents Genevar usage per disease context
info

Popular tool citations

chevron_left eQTL mapping chevron_right
Want to access the full stats & trends on this tool?

Protocols

Genevar specifications

Information


Unique identifier OMICS_04603
Name Genevar
Alternative name GENe Expression VARiation
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for GENe Expression VARiation

Genevar citations

 (58)
library_books

A functional SNP upstream of the ADRB2 gene is associated with COPD

2018
PMCID: 5859892
PMID: 29588580
DOI: 10.2147/COPD.S151153

[…] ulations (data not shown). We further evaluated the effect of this SNP on ADRB2 expression in LCL from 726 HapMap3 individuals in GENe Expression VARiation (http://www.sanger.ac.uk/resources/software/genevar/). The AA genotype of rs12654778 presented a significantly reduced expression of ADRB2, compared with the other genotypes AG or GG in most populations (CHB, Gujarati Indians in Houston, TX, US […]

library_books

Heritable components of the human fecal microbiome are associated with visceral fat

2016
Genome Biol
PMCID: 5036307
PMID: 27666579
DOI: 10.1186/s13059-016-1052-7

[…] otic (MZ) and dizygotic (DZ) female twins from the TwinsUK cohort, as part of the MuTHER project []. We interrogated the candidate SNPs for eQTL results in adipose tissue (subcutaneous fat) using the Genevar software []. The functional impact of the candidate SNPs was also explored using GTEx results across multiple tissues, using GTEx Analysis Release v6 (dbGaP Accession phs000424.v6.p1) []. […]

library_books

Identification of genetic variants predictive of early onset pancreatic cancer through a population science analysis of functional genomic datasets

2016
Oncotarget
PMCID: 5302929
PMID: 27486767
DOI: 10.18632/oncotarget.10924

[…] [] to confirm each SNP in relation to annotated protein-coding genes and/or non-coding RNA genes. We investigated expression quantitative trait loci (eQTL) associations for the significant SNPs using Genevar, a database and Java tool designed for data analysis of SNP-gene associations in eQTL studies integrating multiple datasets []. […]

call_split

Identification of genetic modifiers of age at onset for familial Parkinson’s disease

2016
Hum Mol Genet
PMCID: 5216611
PMID: 27402877
DOI: 10.1093/hmg/ddw206
call_split See protocol

[…] enomebrowser.wustl.edu) and ENCODE (via http://genome.ucsc.edu/index.html) () annotations of putative regulatory elements in the regions of our associated signals. We searched eQTL and mQTL databases Genevar (https://www.sanger.ac.uk/resources/software/genevar/) (), eqtl (http://eqtl.uchicago.edu/cgi-bin/gbrowse/eqtl/), SCAN (http://www.scandb.org/newinterface/about.html) () and BRAINEAC (http://w […]

library_books

Variants in CXCR4 associate with juvenile idiopathic arthritis susceptibility

2016
BMC Med Genet
PMCID: 4804485
PMID: 27005825
DOI: 10.1186/s12881-016-0285-3

[…] .edu/~purcell/plink/MACH, http://www.sph.umich.edu/csg/abecasis/MaCH/index.htmlMetal, http://www.sph.umich.edu/csg/abecasis/Metal/index.htmlMOOSE, http://jama.ama-assn.org/cgi/content/full/283/15/2008Genevar, http://www.sanger.ac.uk/science/tools/genevar-gene-expression-variation-archiveHapMap, http://hapmap.ncbi.nlm.nih.gov/BWA, http://bio-bwa.sourceforge.net/ANNOVAR, http://annovar.openbioinform […]

call_split

MiRNA Related Genetic Variations Associated with Radiotherapy Induced Toxicities in Patients with Locally Advanced Non–Small Cell Lung Cancer

2016
PLoS One
PMCID: 4798772
PMID: 26991123
DOI: 10.1371/journal.pone.0150467
call_split See protocol

[…] ., College Station, TX). Gene-based analysis was performed using Versatile Gene-Based Association Study software (VEGAS) []. Expression Quantitative Trait Loci (eQTL) analysis was conducted using the Genevar [] (GENe Expression VARiation) database(http://www.sanger.ac.uk/resources/software/genevar/). The results were based on data for the Multiple Tissue Human Expression Resource (MuTHER) Study [] […]


Want to access the full list of citations?
Genevar institution(s)
Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK

Genevar review

star_border star_border star_border star_border star_border
star star star star star
Kathrin Bernt's avatar image No country

Kathrin Bernt

star_border star_border star_border star_border star_border
star star star star star
Web
no longer available