GeneVenn pipeline

GeneVenn specifications

Information


Unique identifier OMICS_05568
Name GeneVenn
Interface Web user interface
Restrictions to use None
Input data Some gene lists.
Output data Venn diagrams.
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Youping Deng <>

Publication for GeneVenn

GeneVenn IN pipelines

 (3)
2018
PMCID: 5919700
PMID: 29698473
DOI: 10.1371/journal.pone.0196590

[…] defined as those with both padj < 0.05 and log2 fold change (fc) > 2 (up-regulated) or < -2 (down-regulated). venn diagrams were plotted from the deg lists generated using deseq using the genevenn webtool (genevenn.sourceforge.net)., the singular enrichment analysis (sea) algorithm was used via the agrigo web tool [42] to analyse gene ontology (go) term enrichment of significantly […]

2018
PMCID: 5919700
PMID: 29698473
DOI: 10.1371/journal.pone.0196590

[…] with both padj < 0.05 and log2 fold change (fc) > 2 (up-regulated) or < -2 (down-regulated). venn diagrams were plotted from the deg lists generated using deseq using the genevenn webtool (genevenn.sourceforge.net)., the singular enrichment analysis (sea) algorithm was used via the agrigo web tool [42] to analyse gene ontology (go) term enrichment of significantly up-regulated […]

2015
PMCID: 4388846
PMID: 25849296
DOI: 10.1371/journal.pone.0121902

[…] to two transcripts, the least significantly aligned transcript(s) were omitted., to determine the tissue or timepoint specificity of degs, venn diagrams and gene lists were obtained using http://genevenn.sourceforge.net/. to determine functionality of degs, genone ontology (go) enrichment analysis was performed using http://bioinfo.cau.edu.cn/agrigo/ [22]. sequence data are available […]

GeneVenn institution(s)
Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, MS, USA
GeneVenn funding source(s)
Supported by Dean’s Research Initiative award of the University of Southern Mississippi and the Mississippi Functional Genomics Network (DHHS/NIH/NCRR Grant# 2P20RR016476-04).

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