Genevestigator protocols

Genevestigator statistics

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Associated diseases

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Genevestigator specifications

Information


Unique identifier OMICS_00763
Name Genevestigator
Interface Web user interface
Restrictions to use License purchase required
License Commercial
Computer skills Basic
Stability Stable
Maintained No

Maintainer


This tool is not maintained anymore.

Publication for Genevestigator

Genevestigator in pipelines

 (4)
2018
PMCID: 5954018
PMID: 29765063
DOI: 10.1038/s41598-018-25702-3

[…] coding genes were represented as green nodes., high throughput data about patients with copd were downloaded from geo datasets (https://www.ncbi.nlm.nih.gov/geo) on march 4, 2018, and analyzed using genevestigator software (https://genevestigator.com/). significantly differential expressed protein-coding genes between patients with copd and healthy controls were obtained. next, […]

2016
PMCID: 4861013
PMID: 26962210
DOI: 10.1093/jxb/erw094

[…] signal recognition particle receptor (; ). microarrays/rna-seq data analysis with csb.db (http://csbdb.mpimp-golm.mpg.de), kobas (http://kobas.cbi.pku.edu.cn), genemania (http://genemania.org/) and genevestigator (http://genevestigator.com/gv/) indicate that the expression patterns of the phytolongins may follow those of several vamp7 proteins, as well as ykt62 for phyl1.2. ykt62 has been shown […]

2015
PMCID: 4431829
PMID: 25974423
DOI: 10.1371/journal.pone.0125624

[…] highly expressed in stem, root and leaf. these findings are consistent with data from publicly available expression databases (). transcriptomics analysis using genecat (http://genecat.mpg.de) [], genevestigator (http://www.genevestigator.com/gv/) [] and the arabidopsis efp browser (http://bar.utoronto.ca/efp/cgi-bin/efpweb.cgi) [] indicate both genes are widely expressed with galt5 […]

2013
PMCID: 3797442
PMID: 24137171
DOI: 10.3389/fpls.2013.00406

[…] the tissues analyzed. attcp15 and attcp8 are expressed at low levels in siliques and mature leaves, while attcp22 is not detected in inflorescences and mature leaves (figure ). expression data from genevestigator (hruz et al., ), the arabidopsis efp browser at bar (winter et al., ), atgenexpress (schmid et al., ), and genecat (mutwil et al., ) supports our rt-pcr analysis for attcp8, attcp14, […]


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Genevestigator in publications

 (647)
PMCID: 5942846
PMID: 29702701
DOI: 10.1371/journal.pgen.1007373

[…] (plastids) (). finally, both a previous study and publicly available microarray expression data showed that pgkc is expressed ubiquitously in most plant tissues, including pollen (https://genevestigator.com/) []., our surprising findings regarding pgkc knockouts prompted us to assess how a housekeeping glycolytic enzyme can regulate cell polarity. we first performed a series of assays […]

PMCID: 5913222
PMID: 29686228
DOI: 10.1038/s41598-018-24546-1

[…] food group [regular food vs. lithium treatment: 1.17 (0.93, 1.24) vs. 1.01 (0.69, 1.18), location shift (95%ci): −0.18 (−0.44 to 0.007), p = 0.050, fig. ]., we utilized the refgenes tool of the genevestigator software that ranks genes based on the variance in their expression in a chosen set of samples from microarrays database. we searched for the most stable genes in the hippocampus […]

PMCID: 5877115
PMID: 29628934
DOI: 10.3389/fpls.2018.00371

[…] in our experiments revealed high expression levels of pldα1-yfp in the apical and lateral root cap cells. these findings were in agreement with absolute expression levels of pldα1 transcript from genevestigator transcriptomic data (brady et al., ). high expression levels of pldα1-yfp were found also in trichoblast cell files and in developing roots hairs suggesting its role during root hair […]

PMCID: 5877776
PMID: 29558397
DOI: 10.3390/ijms19030915

[…] tissue, but showed a little expression, at the limit of detection after kcn treatment, therefore a fold-change could not be calculated although this gene may also be stress-responsive ()., data from genevestigator show that the same stress-responsive genes identified in the kcn treatment in rice are up-regulated under many abiotic and biotic stresses, including cold, drought, nutrient stress, […]

PMCID: 5913721
PMID: 29583156
DOI: 10.1590/1678-4685-GMB-2017-0076

[…] (meme) utility program (http://meme.sdsc.edu) (). the sequence logo was constructed with weblogo (http://weblogo.berkeley.edu/logo.cgi) ()., microarray data available at the web site (https://www.genevestigator.com) () were used to determine tissue specificity and intensity of expression of gpat and putative gpat genes of a. thaliana, g. max, o. sativa and z. mays. the hierarchical clustering […]


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Genevestigator institution(s)
Institute of Theoretical Computer Science, ETH Zurich, Zurich, Switzerland

Genevestigator review

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Anonymous user #249

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Web
Very impressive database (high quality curated data) and nice tools