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Protocols

Genevestigator specifications

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Unique identifier OMICS_00763
Name Genevestigator
Interface Web user interface
Restrictions to use License purchase required
License Commercial
Computer skills Basic
Stability Stable
Maintained No

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Publication for Genevestigator

Genevestigator citations

 (650)
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Long non coding RNA expression patterns in lung tissues of chronic cigarette smoke induced COPD mouse model

2018
PMCID: 5954018
PMID: 29765063
DOI: 10.1038/s41598-018-25702-3
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[…] coding genes were represented as green nodes., high throughput data about patients with copd were downloaded from geo datasets (https://www.ncbi.nlm.nih.gov/geo) on march 4, 2018, and analyzed using genevestigator software (https://genevestigator.com/). significantly differential expressed protein-coding genes between patients with copd and healthy controls were obtained. next, […]

library_books

Glycolysis regulates pollen tube polarity via Rho GTPase signaling

2018
PMCID: 5942846
PMID: 29702701
DOI: 10.1371/journal.pgen.1007373

[…] (plastids) (). finally, both a previous study and publicly available microarray expression data showed that pgkc is expressed ubiquitously in most plant tissues, including pollen (https://genevestigator.com/) []., our surprising findings regarding pgkc knockouts prompted us to assess how a housekeeping glycolytic enzyme can regulate cell polarity. we first performed a series of assays […]

library_books

The observed alteration in BCL2 expression following lithium treatment is influenced by the choice of normalization method

2018
PMCID: 5913222
PMID: 29686228
DOI: 10.1038/s41598-018-24546-1

[…] food group [regular food vs. lithium treatment: 1.17 (0.93, 1.24) vs. 1.01 (0.69, 1.18), location shift (95%ci): −0.18 (−0.44 to 0.007), p = 0.050, fig. ]., we utilized the refgenes tool of the genevestigator software that ranks genes based on the variance in their expression in a chosen set of samples from microarrays database. we searched for the most stable genes in the hippocampus […]

library_books

Gene Expression Pattern and Protein Localization of Arabidopsis Phospholipase D Alpha 1 Revealed by Advanced Light Sheet and Super Resolution Microscopy

2018
PMCID: 5877115
PMID: 29628934
DOI: 10.3389/fpls.2018.00371

[…] in our experiments revealed high expression levels of pldα1-yfp in the apical and lateral root cap cells. these findings were in agreement with absolute expression levels of pldα1 transcript from genevestigator transcriptomic data (brady et al., ). high expression levels of pldα1-yfp were found also in trichoblast cell files and in developing roots hairs suggesting its role during root hair […]

library_books

Alternative Respiratory Pathway Component Genes (AOX and ND) in Rice and Barley and Their Response to Stress

2018
PMCID: 5877776
PMID: 29558397
DOI: 10.3390/ijms19030915

[…] tissue, but showed a little expression, at the limit of detection after kcn treatment, therefore a fold-change could not be calculated although this gene may also be stress-responsive ()., data from genevestigator show that the same stress-responsive genes identified in the kcn treatment in rice are up-regulated under many abiotic and biotic stresses, including cold, drought, nutrient stress, […]

library_books

Genome wide analysis of the Glycerol 3 Phosphate Acyltransferase (GPAT) gene family reveals the evolution and diversification of plant GPATs

2018
PMCID: 5913721
PMID: 29583156
DOI: 10.1590/1678-4685-GMB-2017-0076

[…] (meme) utility program (http://meme.sdsc.edu) (). the sequence logo was constructed with weblogo (http://weblogo.berkeley.edu/logo.cgi) ()., microarray data available at the web site (https://www.genevestigator.com) () were used to determine tissue specificity and intensity of expression of gpat and putative gpat genes of a. thaliana, g. max, o. sativa and z. mays. the hierarchical clustering […]


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Genevestigator institution(s)
Institute of Theoretical Computer Science, ETH Zurich, Zurich, Switzerland

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Anonymous user #249

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Very impressive database (high quality curated data) and nice tools