Geneways statistics

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Associated diseases

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Geneways specifications

Information


Unique identifier OMICS_01182
Name Geneways
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability No
Maintained No

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Publication for Geneways

Geneways in publications

 (24)
PMCID: 5835920
PMID: 29541247
DOI: 10.3892/ol.2018.7910

[…] with lung cancer (). busch et al () identified that induction of arf is an early response in lung tumorigenesis that mounts a barrier against tumor growth and malignant progression. according to the geneways7.0 database, li et al () reported that cdkn2a is associated with non-small lung cancer. in addition, cisneros et al () demonstrated that many ipf fibroblasts exhibit decreased expression […]

PMCID: 5762563
PMID: 29348878
DOI: 10.18632/oncotarget.22878

[…] interaction networks. these networks were built based on human ppis, fly ppis, worm ppis, yeast ppis, domain interaction, lee's gene expression, prieto's gene expression, go bp sharing and ppis from geneways []. we found that the corresponding proportions of the genes linked to the functional interaction (fi) networks in the four modules were 80.63%, 83.78%, 76.60% and 87.20%, respectively (). […]

PMCID: 5701033
PMID: 29170401
DOI: 10.1038/s41598-017-16270-z

[…] public web-server for the analysis and visualization of comprehensive knowledge regarding common molecular mechanism-based disease-disease connectivity. the disease-gene relationships from generif, geneways and omim were contained in the disease-connect database. we ultimately extracted 4551 disease-gene relationships., we extracted the disease-phenotype relationships from semrep, […]

PMCID: 5746105
PMID: 29296203
DOI: 10.18632/oncotarget.21201

[…] could be consolidated by considering biological processes to reveal networks of immune, inflammation, acute phase and stress responses., in an effort to determine regulatory gene networks the geneways platform was queried; in the case of liver specific gene regulations thrombospondin 1 (thbs1), tnf (ligand) superfamily, member 11 (tnfsf11), s100 calcium binding protein a8 (s100a8) […]

PMCID: 5581332
PMID: 28894735
DOI: 10.3389/fbioe.2017.00048

[…] blagosklonny and pardee, ; soldatova and rzhetsky, ). several co-occurrence based-lbd approaches, such as copub mapper (alako et al., ), pubgene (jenssen et al., ), chilibot (chen and sharp, ), and geneways (rzhetsky et al., ), have been developed. other approaches have focused on capturing higher order implicit associations, i.e., associations between any pair of entities that do not directly […]


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Geneways institution(s)
Columbia Genome Center, Columbia University, New York, NY, USA

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