GeneWeaver specifications

Information


Unique identifier OMICS_02232
Name GeneWeaver
Interface Web user interface, Application programming interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained No

Maintainer


This tool is not available anymore.

Additional information


https://geneweaver.org/help/

Publications for GeneWeaver

GeneWeaver in publications

 (7)
PMCID: 5490203
PMID: 28650954
DOI: 10.1038/ncomms15475

[…] excluded screens with <35 hits., a list of genes (gsid=gs248996) and their sd hit rate (per cent of measures showing a statistically significant sex*genotype interaction) were entered into the geneweaver database. genes with a 4% or greater hit rate (gsids=gs248973) were stored in a gene set. a ‘search for similar gene sets’ was performed using jaccard similarity of gs248973f […]

PMCID: 4720795
PMID: 26834590
DOI: 10.3389/fnbeh.2016.00001

[…] strategies for aggregating and synthesizing data across diverse technologies, species, and experimental paradigms. to address this need, we developed a publicly available web-based software system, geneweaver.org, that combines curated and user submitted functional genomic data (i.e., gene sets consisting of genes and gene products) from diverse experiments across numerous species, harmonized […]

PMCID: 4210136
PMID: 25347824
DOI: 10.1371/journal.pone.0111318

[…] of attributes associated with a subset of samples. for an overview of biclustering methods see the reviews of madeira and oliveira and kriegel et al. . alternatively, baker el al. , developed geneweaver system aiming to integrate multiple data sources to identify associations between phenotypes and gene sets. the system was capable of demonstrating the clustered genes and phenotypes […]

PMCID: 4202189
PMID: 25374613
DOI: 10.1186/1753-6561-8-S6-S4

[…] through various parent-child relationships to help visualization and discovery of emergent kernel driven relationships. interrogating common relationships among biological networks and conventional geneweaver gene lists will increase functional specificity and reliability of the shared biological components. this approach enables self-organization of biological processes through shared […]

PMCID: 4032469
PMID: 24700285
DOI: 10.1007/s00335-014-9508-0

[…] patterns with the candidate genes. interpro protein domain (hunter et al. ) and mp annotations were obtained from mgd. pain-related phenotype data were collected from mgd, ipa, paingenesdb, and geneweaver, a web-based tool that allows users to integrate phenotype-centered gene sets across species, tissues, and experimental platform (baker et al. ). go terms were obtained from mgd and amigo […]


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GeneWeaver institution(s)
The Jackson Laboratory, Bar Harbor, ME, USA; The University of Arizona, Molecular and Cellular Biology, Tuscon, AZ, USA; Baylor University, Waco, TX, USA; The Jackson Laboratory Nathan Shock Center of Excellence in the Basic Biology of Aging, The Jackson Laboratory, Bar Harbor, ME, USA; University of Tennessee Knoxville, Knoxville, TN, USA
GeneWeaver funding source(s)
Supported 338 by NIH R01 AA018776 and Nathan Shock Center of Excellence on the Biology of Aging NIH 339 AG038070.

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