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Genewindow specifications

Information


Unique identifier OMICS_14878
Name Genewindow
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 3.0
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Meredith Yeager <>

Publication for Genewindow

Genewindow citations

 (5)
library_books

The prognostic impact of mutations in spliceosomal genes for myelodysplastic syndrome patients without ring sideroblasts

2015
PMCID: 4483202
PMID: 26115659
DOI: 10.1186/s12885-015-1493-5

[…] to obtain preliminary evidence regarding polymorphisms, mutations, and for translation of amino acids. results obtained from mds patients were confirmed on an online database (http://genewindow.nci.nih.gov/welcome; additional file ). the aberrant status of sf3b1, u2af1, and srsf2, was confirmed by ta cloning (fig. ) using the pgem-t easy vector (promega, madison, wi, usa). […]

library_books

Novel variants in the PRDX6 Gene and the risk of Acute Lung Injury following major trauma

2011
PMCID: 3121666
PMID: 21627785
DOI: 10.1186/1471-2350-12-77

[…] were compared with those registered in the ncbi dbsnp database (build 130) and 43 were found to be novel snps (table ). thirty seven were matched with snps catalogued in dbsnp (build 130) and genewindow http://genewindow.nci.nih.gov/welcome based on chromosome position (table ). twenty five of the novel snps uncovered had a maf > 0.04 and were submitted to the ncbi to be catalogued […]

library_books

Detection of Somatic Mutations by High Resolution DNA Melting (HRM) Analysis in Multiple Cancers

2011
PMCID: 3022009
PMID: 21264207
DOI: 10.1371/journal.pone.0014522

[…] detected by sequencing were classified as novel alterations or known snps (or single nucleotide polymorphisms) if found in dbsnp, build 130, from the ncbi (www.ncbi.nlm.nih.gov/projects/snp/), using genewindow (genewindow.nci.nih.gov) ., the association between the quantity of dna extracted from the paraffin-embedded tissue (levels: ≤10 ng/µl, 11–20 ng/µl, 21–30 ng/µl, and >30 ng/µl) […]

library_books

Dopamine genes and nicotine dependence in treatment seeking and community smokers

2009
PMCID: 3558036
PMID: 19494806
DOI: 10.1038/npp.2009.52

[…] analyses. genetic interaction of slc6a3 and nr4a2 snps in pedigrees was modeled using pgmdr ()., we evaluated the physical location of snps in relationship to ncbi build 35 genomic annotation with genewindow (), with the ucsc genome browser () and linkage disequilibrium (ld) among snps with haploview 4.0 (), using genotype data from the treatment seeking smoker cohort or from the ceu hapmap […]

library_books

cis sequence effects on gene expression

2007
PMCID: 2077339
PMID: 17727713
DOI: 10.1186/1471-2164-8-296

[…] phylogeny reconstruction using neighbor-joining with a uniform model of genetic distance in mega version 3.1 []. we searched for snps in genomic sequence complementary to probe sequence using genewindow [], using data from ncbi genome build 35.1, dbsnp build 125, and the snp500cancer resequencing program., we managed gene expression and snp and haplotype data and performed descriptive […]


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Genewindow funding source(s)
Core Genotyping Facility, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Gaithersburg, MD, USA; Intramural Research Support Program, SAIC-Frederick, NCI-FCRDC, Frederick, MD, USA; Section on Genomic Variation, Pediatric Oncology Branch, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA

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