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Number of citations per year for the bioinformatics software tool GeneWiz
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Protocols

GeneWiz specifications

Information


Unique identifier OMICS_17891
Name GeneWiz
Interface Web user interface
Restrictions to use None
Programming languages Java
Computer skills Basic
Version 0.94
Stability Stable
Maintained Yes

Maintainer


  • person_outline Peter Hallin

Publication for GeneWiz

GeneWiz citations

 (14)
library_books

Staphylococcus aureus HemX Modulates Glutamyl tRNA Reductase Abundance To Regulate Heme Biosynthesis

2018
MBio
PMCID: 5801465
PMID: 29437922
DOI: 10.1128/mBio.02287-17

[…] to 5 ml, 15-ml round-bottomed polypropylene tubes with aeration lids were used, at a 45° angle in the incubator. For cloning and mutagenesis in plasmids, all constructs were confirmed by sequencing (GeneWiz). Unless noted otherwise, all chemicals are from Sigma. All molecular biology reagents were from New England Biolabs (NEB) and used according to the manufacturer’s instructions, unless otherwi […]

library_books

Mosaic structure of Mycobacterium bovis BCG genomes as a representation of phage sequences’ mobility

2016
BMC Genomics
PMCID: 5249017
PMID: 28105923
DOI: 10.1186/s12864-016-3355-1

[…] After the verification of all tandem repeats and the gap closure, the sequence of assembling genome BCG Russia 368 was visualized in GeneWiz (Fig. ). The place of the change in GC-Skew agreed with the OriC and the first nucleotide position in BCG Russia 368 genome. Different types of repeats, shown in this Figure, correlated with t […]

library_books

Analysis of Arbovirus Isolates from Australia Identifies Novel Bunyaviruses Including a Mapputta Group Virus from Western Australia That Links Gan Gan and Maprik Viruses

2016
PLoS One
PMCID: 5072647
PMID: 27764175
DOI: 10.1371/journal.pone.0164868

[…] gen), and either sequenced directly, yielding a majority sequence, or after cloning into pGEM-Teasy plasmid vector (Promega). Sequences were obtained for both strands by automated dideoxy-sequencing (Genewiz, South Plainfield, NJ, USA, or Applied Biosystems). Genomic termini were characterized by rapid amplification of cDNA ends using 5’-, or 3’-RACE (RACE kits; Invitrogen). […]

call_split

A recellularized human colon model identifies cancer driver genes

2016
Nat Biotechnol
PMCID: 4980997
PMID: 27398792
DOI: 10.1038/nbt.3586
call_split See protocol

[…] d within 1000 bp of known transcripts in RefGene to cover both the core promoter and proximal promoter elements []. In addition to this, Sanger DNA sequencing of chain-terminating dideoxynucleotides (Genewiz, Inc.) was used to confirm the transposon insertion sites. […]

library_books

Molecular and Genomic Characterization of Vibrio mimicus Isolated from a Frozen Shrimp Processing Facility in Mexico

2016
PLoS One
PMCID: 4701432
PMID: 26730584
DOI: 10.1371/journal.pone.0144885

[…] 50 41,061 bp, 92.76% reads mapped) were obtained. A summary of the general features from the assembled genomes by chromosome of CAIM 1882 and CAIM 1883 are shown in .A genome atlas was generated with GeneWiz browser, where the differences between the genomes of V. mimicus CAIM 602, CAIM 1882, CAIM 1883 and V. mimicus 451 can be visualized (). A major variability was observed in ChII than in ChI, s […]

call_split

Cell periphery related proteins as major genomic targets behind the adaptive evolution of an industrial Saccharomyces cerevisiae strain to combined heat and hydrolysate stress

2015
BMC Genomics
PMCID: 4496855
PMID: 26156140
DOI: 10.1186/s12864-015-1737-4
call_split See protocol

[…] The sequencing of ER and ISO12 was performed by Genewiz Inc. (South Plainfield, NJ, USA) using Illumina MiSeq 2x250bp (Illumina Inc., San Diego, CA, USA). The de novo assembly of ER and ISO12 and the reference mapping and variant calling of both st […]


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GeneWiz institution(s)
Center for Biological Sequence Analysis, Department of Systems Biology, The Technical University of Denmark, Lyngby, Denmark; Lersoe Parkalle 37, Copenhagen, Denmark; Roche Diagnostics Ltd., Rotkreuz, Switzerland; UC Davis Genome Center, University of California, Davis, CA, USA
GeneWiz funding source(s)
This work was supported by the Danish Center for Scientific Computing, NSF Research Grant DBI-0416764, the Danish Research Council grant 26- 06-0349, and the EU EMBRACE network of Excellence, contract number LSHG-CT-2004-512092.

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