GeneXplorer statistics

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Citations per year

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Associated diseases

Associated diseases

GeneXplorer specifications


Unique identifier OMICS_24241
Name GeneXplorer
Alternative name Microarray-GeneXplorer
Software type Application/Script
Interface Command line interface
Restrictions to use None
Output data A set of frames that can be used for viewing the expression data.
Output format HTML
Operating system Unix/Linux
Programming languages Perl
License MIT License
Computer skills Advanced
Version 0.11
Stability Stable
Maintained Yes



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  • person_outline Gavin Sherlock <>
  • person_outline Christian Rees <>
  • person_outline Janos Demeter <>
  • person_outline John Matese <>
  • person_outline David Botstein <>

Publication for GeneXplorer

GeneXplorer in publications

PMCID: 4758378
PMID: 26949515
DOI: 10.5256/f1000research.6818.r9713

[…] inspection of expression of upr genes across the integrated experiments, we implemented the upr-hd tool. it is database with a web-interface based on a modified and enhanced version of the genexplorer software . upr-hd enables the query of individual or multiple upr genes, the visualization of the expression changes observed in the microarray experiments and their export in table […]

PMCID: 4079066
PMID: 25071821
DOI: 10.3389/fgene.2014.00191

[…] for 3073 genes. it aims to assist researchers in the characterization and functional annotation of genes using the guilty-by-association principle. its visualization tool is a modified version of genexplorer (rees et al., ). different data subsets can be selected, with genes associated to different functions, based on whether all perturbations (genetic and environmental) or only environmental […]

PMCID: 1156867
PMID: 15890080
DOI: 10.1186/1471-2105-6-115

[…] [] provides an innovative way to visualize hierarchically clustered data as well as data organized in the context of the go hierarchy, but is not intended for cluster analysis. new tools such as genexplorer [] provide an interactive method for visualization and analysis of microarray data on websites, but do not focus on the task of cluster analysis. several tools, including […]

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GeneXplorer institution(s)
Department of Genetics, Stanford University Medical School, Stanford, CA, USA; Department. of Biochemistry, Stanford University School of Medicine, Stanford, CA, USA; Lewis-Sigler Institute for Integrative Genomics Carl Icahn Laboratory, Princeton University, Princeton, NJ, USA
GeneXplorer funding source(s)
Supported by a grant from the NHGRI, R01HG002732.

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