geneXtendeR specifications

Unique identifier:
OMICS_13292
Interface:
Command line interface
Input data:
A list of peak coordinates data (chromosome, peak start position, peak end position).
Output data:
An annotated peaks file consisting of gene IDs, gene names, and proximity information (i.e., distance of peak to nearest gene).
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 3.0
Version:
1.0.0
Requirements:
Bedtools, Rtracklayer
Software type:
Package/Module
Restrictions to use:
None
Input format:
TXT
Output format:
TXT
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

versioning

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geneXtendeR distribution

download

geneXtendeR support

Documentation

Maintainer

  • Bohdan B. Khomtchouk <>

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Publications

Institution(s)

Department of Biology, Stanford University, Stanford, CA, USA; Center for Therapeutic Innovation and Department of Psychiatry and Behavioral Sciences, University of Miami Miller School of Medicine, Miami, FL, USA; John P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, FL, USA

Funding source(s)

Supported by the Army Research Office (ARO), National Defense Science and Engineering Graduate (NDSEG) Fellowship, 32 CFR 168a.

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