geneXtendeR specifications

Information


Unique identifier OMICS_13292
Name geneXtendeR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A list of peak coordinates data (chromosome, peak start position, peak end position).
Input format TXT
Output data An annotated peaks file consisting of gene IDs, gene names, and proximity information (i.e., distance of peak to nearest gene).
Output format TXT
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0.0
Stability Stable
Requirements Bedtools, Rtracklayer
Maintained Yes

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Documentation


Maintainer


  • person_outline Bohdan B. Khomtchouk <>

Publication for geneXtendeR

geneXtendeR institution(s)
Department of Biology, Stanford University, Stanford, CA, USA; Center for Therapeutic Innovation and Department of Psychiatry and Behavioral Sciences, University of Miami Miller School of Medicine, Miami, FL, USA; John P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, FL, USA
geneXtendeR funding source(s)
Supported by the Army Research Office (ARO), National Defense Science and Engineering Graduate (NDSEG) Fellowship, 32 CFR 168a.

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