GeNICE specifications


Unique identifier OMICS_19352
Alternative names Gene Network Inference by Clustering Exhaustive search and multivariate analysis, GeNIA (Gene Network Inference App)
Software type Framework/Library
Interface Graphical user interface
Restrictions to use None
Input data Some gene expression time series data set.
Operating system Unix/Linux
Programming languages Java
Computer skills Medium
Version 1.0.54
Stability Stable
Maintained Yes




No version available


  • person_outline Ricardo Jacomini

Publication for Gene Network Inference by Clustering Exhaustive search and multivariate analysis

GeNICE citation


GenIce: Hydrogen‐Disordered Ice Generator

J Comput Chem
PMCID: 5725672
PMID: 29023825
DOI: 10.1002/jcc.25077

[…] To create a 3 × 3 × 3 unit cell replica of hydrogen‐disordered ice IV (4) in the Gromacs format with the TIP4P water model, enter the following command: genice 4 ‐‐water tip4p ‐‐rep 3 3 3 > ice4.gro genice 4 ‐‐water tip4p ‐‐rep 3 3 3 > ice4.gro See Table for the preset ice structures. Note that the same structure may have different names in differe […]

GeNICE institution(s)
Escola Politecnica da Universidade de Sao Paulo, Sao Paulo, Brazil; Universidade Federal do ABC, Santo Andre, Brazil
GeNICE funding source(s)
Supported by CAPES, CNPq (grants 304955/2014-0, 311608/2014-0), and Sao Paulo Research Foundation, FAPESP (grants 2011/50761-2, 2015/01587-0, 2015/16310-4, 2016/ 21047-3).

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