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Génie specifications

Information


Unique identifier OMICS_04105
Name Génie
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Jean F. Fontaine

Publication for Génie

Génie citations

 (3)
library_books

Candidate gene prioritization with Endeavour

2016
Nucleic Acids Res
PMCID: 4987917
PMID: 27131783
DOI: 10.1093/nar/gkw365

[…] genes, and are therefore more suited for diseases of unknown etiology. These methods rely on disease relevant keywords, or on complementary disease specific experimental data sets. For instance, the Génie web server ranks genes using a text-mining approach that is fed with user-selected keywords and can be complemented with orthology information (). Alternatively, MetaRanker integrates multiple d […]

library_books

Dynamic software design for clinical exome and genome analyses: insights from bioinformaticians, clinical geneticists, and genetic counselors

2015
PMCID: 4784553
PMID: 26117142
DOI: 10.1093/jamia/ocv053

[…] y to be accessed graphically (). Figure 6: Clinicians emphasized that while there are tools that offer online software applications to obtain candidate genes based upon keyword queries (e.g., MeSHOP, Genie, Ingenuity [http://www.ingenuity.com]), these capabilities are not consistently accessible to integrated WES/WGS analysis software and the output cannot be combined with exome data without addit […]

library_books

Finding pathway modulating genes from a novel Ontology Fingerprint derived gene network

2014
Nucleic Acids Res
PMCID: 4191379
PMID: 25063300
DOI: 10.1093/nar/gku678

[…] ity of these approaches, such as the work by Jenssen et al. ()), infer gene–gene relationships by identifying the co-occurrence of two genes within the biomedical literature, with extensions, such as Génie (), in which comparative genomics approaches were employed. However, this approach is limited by the fact that 70% of PubMed abstracts only contain information about a single gene (based on a ge […]


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Génie institution(s)
Max Delbrück Center for Molecular Medicine, Berlin, Germany

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