genipe specifications


Unique identifier OMICS_12568
Name genipe
Alternative name GENome-wide Imputation PipelinE
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Multiple input files are required for genipe, including the initial genotypes and the reference files (for imputation).
Output data The genipe pipeline generates output files for each of the autosomal chromosomes (from 1 to 22).
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Numpy, Jinja2, pandas, setuptools, Plink, shapeit, impute2
Maintained Yes


No version available



  • person_outline Louis-Philippe Lemieux Perreault

Publication for GENome-wide Imputation PipelinE

genipe institution(s)
Beaulieu-Saucier Université de Montréal Pharmacogenomics Centre, Montreal Heart Institute Research Center, Montréal, Canada; Université de Montréal, Faculty of Medicine, Montréal, Canada
genipe funding source(s)
This work was supported by the Montreal Heart Institute Foundation, Genome Canada and Genome Quebec.

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