GenMAPP pipeline

GenMAPP specifications

Information


Unique identifier OMICS_02697
Name GenMAPP
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/GenMAPP

Subtool


  • MAPPFinder

Versioning


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Maintainers


Additional information


MAPPFinder is a part of the GenMAPP software.

Publications for GenMAPP

GenMAPP citations

 (7)
2016
PMCID: 5342096

[…] predicted the functions of mirnas based on the functional enrichment analysis of their target genes. mirgator and diana-mirpath provided the statistically enriched gene ontology functions and kegg/genmapp/biocarta pathways [8, 9]. another comprehensive analysis established a dictionary on mirnas and their putative target pathways and uncovered that differentially expressed genes in cancers […]

2012
PMCID: 3448498

[…] 34 were associated with type. those gene sets with a q < 0.1 are listed in table 4. seven of the sets featured in two or more of the page analyses outcomes: hemoglobin complex, heme biosynthesis_ genmapp, glutathione metabolism_kegg, proteasome_kegg, proteasome core complex (sensu eukaryota), immune response and mitochondrial fatty acid betaoxidation_genmapp., both these initial studies using […]

2012
PMCID: 5054714

[…] analysis (ingenuity┬« systems, www.ingenuity.com). we used different colors to represent different modulation patterns of degs in each kegg pathway based on software package genmapp 2.0 (http://www.genmapp.org/)., ts genes were defined as those that are preferentially expressed in a particular tissue. to annotate ts genes, we obtained two sets of ts genes with one based on est data [35] […]

2011
PMCID: 3030591

[…] genes with p-value less than 0.01 were considered to be distinctly expressed. kegg analysis was based on the comparative results between our mapping genes and the updated kegg database [32], [33]. genmapp 2.0 and pathvisio were respectively used to evaluate differentiated gene expression in a variety of biological pathways [34], [35]., the samples for qrt-pcr were derived from the human […]

2010
PMCID: 3098008

[…] the bioconductor genomegraphs package [62]. to identify pathways that were the most over-presented in the lists of differentially expressed or alternative spliced genes, functional analyses using mappfinder and genmapp v2.1 were performed http://www.genmapp.org/[63]. the database for annotation, visualization and integrated discovery v6 (david; http://david.abcc.ncifcrf.gov/) [64] was used […]

GenMAPP institution(s)
Gladstone Institute of Cardiovascular Disease, University of California, San Francisco, CA, USA; Cardiovascular Research Institute, University of California, San Francisco, CA, USA; Departments of Medicine and Cellular and Molecular Pharmacology, University of California, San Francisco, CA, USA; Functional Genomics Lab, University of California, Berkeley, CA, USA
GenMAPP funding source(s)
Supported by the J. David Gladstone Institutes, the San Francisco General Hospital General Clinical Research Center, the National Heart, Lung, and Blood Institute, San Francisco General Hospital General Clinical Research Center MO1RR00083 and the NHLBI Programs for Genomic Applications (BayGenomics).

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