GeNMR statistics

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Citations per year

Number of citations per year for the bioinformatics software tool GeNMR
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Tool usage distribution map

This map represents all the scientific publications referring to GeNMR per scientific context
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Associated diseases

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Popular tool citations

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GeNMR specifications

Information


Unique identifier OMICS_17112
Name GeNMR
Alternative name GEnerate NMR structure
Interface Web user interface
Restrictions to use None
Input data Protein primary sequence, NMR chemical shifts and NOE & H-bond distance restraints.
Input format Fasta, BMRB NMR-STAR 2.1 format and XPLOR format.
Output data The results are displayed on the web and emailed to the user. The contents of the email include the final PDB Structure if the program successfully managed to generate a PDB Structure. Also within that email, the user can view the 3D structure of the protein.
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline David Wishart

Additional information


http://www.genmr.ca/i_o_formats.html

Publication for GEnerate NMR structure

GeNMR citation

library_books

Structural Models of Zebrafish (Danio rerio) NOD1 and NOD2 NACHT Domains Suggest Differential ATP Binding Orientations: Insights from Computational Modeling, Docking and Molecular Dynamics Simulations

2015
PLoS One
PMCID: 4374677
PMID: 25811192
DOI: 10.1371/journal.pone.0121415

[…] Probity server indicated no bad bond lengths and angles for the predicted models. The H-bond energy, packing defect, bump score, radius of gyration (Rg) and deviation of Θ angles calculated at VADAR, GeNMR and PROSESS servers were within the cut-off range, as summarized in . […]


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GeNMR institution(s)
Department of Computing Science; Department of Biological Sciences University of Alberta, Edmonton, AB, Canada; National Research Council, National Institute for Nanotechnology (NINT), Edmonton, AB, Canada
GeNMR funding source(s)
Supported by Alberta Prion Research Institute, PrioNet, NSERC (Natural Sciences and Engineering Research Council) and Genome Alberta.

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