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GeNNet specifications


Unique identifier OMICS_16551
Name GeNNet
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes




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Publication for GeNNet

GeNNet citations


Ecosystem management and land conservation can substantially contribute to California’s climate mitigation goals

PMCID: 5715745
PMID: 29133408
DOI: 10.1073/pnas.1707811114

[…] 3.3.2)., many individuals provided thoughtful feedback during the development of this study. in particular, we thank louis blumberg, ashley conrad-saydah, joe fargione, jeffrey greenblatt, sasha gennet, russ henley, campbell ingram, claire jahns, chris keithley, nick lapis, tung le, john nickerson, hugh safford, and klaus scott. we appreciate the assistance with data on compost amendments […]


Long‐term and widespread changes in agricultural practices influence ring‐necked pheasant abundance in California

PMCID: 5395463
PMID: 28428846
DOI: 10.1002/ece3.2675

[…] small, wildlife‐friendly nonfarmed habitats through disking or application of herbicides to field edges, crop corners, fence rows, stream banks, and other vegetated corridors (chamberlain et al., ; gennet et al., ). such areas are important sources of food and refuge for numerous plant and insect species beneficial to farmland birds. furthermore, new food safety standards implemented to reduce […]


Generalization and fine mapping of European ancestry based central adiposity variants in African ancestry populations

PMCID: 5296276
PMID: 27867202
DOI: 10.1038/ijo.2016.207

[…] (cardia) study, the cardiovascular health study (chs), the multiethnic cohort study (mec), and the women’s health initiative (whi). we also extended the collaboration to three additional studies – gennet, hypertension genetic epidemiology network (hypergen), and the multi-ethnic study of atherosclerosis (mesa), which brought up the total sample size to 15 945 (see for detailed study […]


The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals

PMCID: 5042863
PMID: 27618452
DOI: 10.1038/ng.3667

[…] pi: w.p., hunt2: study phenotyping: k.kvaløy, j.h., o.l.h. genotyping or analysis: a.u.j. study pi: k.h., fincavas: genotyping or analysis: t.l., l.-p.l., k.n., m.kähönen study pi: t.l., m.kähönen, gennet: study phenotyping: r.s.c., a.b.w. genotyping or analysis: a.c., v.p., m.x.s., d.e.a., g.b.e. study pi: a.c., r.s.c., a.b.w., scarfsheep: study phenotyping: b.g. genotyping or analysis: r.j.s. […]


Epigenetic regulation of diacylglycerol kinase alpha promotes radiation induced fibrosis

PMCID: 4792958
PMID: 26964756
DOI: 10.1038/ncomms10893

[…] selected the edges to be included into the final network. all statistical analyses were performed by using the statistical software environment r, version 3.0.2 with r-packages impute, betareg and gennet and bioconductor packages lumi and methylumi., accession codes: the illumina 450 k array data have been deposited in the the european genome-phenome archive (ega) under the accession number […]


Physical activity and FTO genotype by physical activity interactive influences on obesity

PMCID: 4765034
PMID: 26908368
DOI: 10.1186/s12863-016-0357-6

[…] between fto genetic variants and obesity measures [, –, ]. scuteri et al. [] first found the snp rs9930506 in relation to bmi, hip circumference, and weight in 839 hispanic american in the gennet study. other groups have attempted not only to replicate previous findings, but also to find more associations of fto snps with other adiposity-associated variables such as computed […]

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GeNNet institution(s)
National Institute of Cancer (INCA), Rio de Janeiro, Brazil; National Laboratory for Scientific Computing (LNCC), Petrópolis, Brazil; Oswaldo Cruz Foundation (Fiocruz), Rio de Janeiro, Brazil
GeNNet funding source(s)
This work has been supported by CAPES (Coordenacao de Aperfeicoamento de Pessoal de Nivel Superior) and CNPq (Conselho Nacional de Desenvolvimento Cientfico e Tecnologico) funding.

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