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Citations per year

Number of citations per year for the bioinformatics software tool GENO3D

Tool usage distribution map

This map represents all the scientific publications referring to GENO3D per scientific context
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GENO3D specifications


Unique identifier OMICS_13613
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data Protein sequence
Output data 3D models
Output format PDB
Computer skills Basic
Stability Stable
Maintained Yes



  • person_outline Rhiju Das

Publication for GENO3D

GENO3D citations


Influence of cell type and cell culture media on the propagation of foot and mouth disease virus with regard to vaccine quality

Virol J
PMCID: 5857075
PMID: 29548334
DOI: 10.1186/s12985-018-0956-0

[…] Amino acid sequences of the original virus and the final passages in BHK179 and BHK-2P were used to model virus capsid protomers using the Geno3D algorithm []. The X-ray crystal structures of A24 Cruzeiro [] (Protein Data Bank accession 1ZBE) and O1 Manisa [] (1FOD) served as templates. In total, ten possible structures were generated an […]


Characterization of influenza A viruses with polymorphism in PB2 residues 701 and 702

Sci Rep
PMCID: 5595998
PMID: 28900145
DOI: 10.1038/s41598-017-11625-y

[…] The structural prediction of the protein model was determined by a protein modelling tool, Geno3D, with three PDB templates (PDB ID: 3CW4, 3L56 and 2GMO). The presentation of the protein model was visualized by Chimera. The electrostatic distribution was determined by Coloumb’s Law, which i […]


An Insight Into Structure, Function, and Expression Analysis of 3 Hydroxy 3 Methylglutaryl CoA Reductase of Cymbopogon winterianus

Bioinform Biol Insights
PMCID: 5390926
PMID: 28469419
DOI: 10.1177/1177932217701735

[…] able templates. To cross-check the reliability of templates identified through DELTA-BLAST program, we used fold-recognition servers for template identification which includes 3D-Jury,, and Geno3D. The template showing maximum identity and highest percentage of query coverage according to both fold-recognition servers and DELTA-BLAST was finally chosen for the construction of 3-dimension […]


Genomics and evolutionary aspect of calcium signaling event in calmodulin and calmodulin like proteins in plants

BMC Plant Biol
PMCID: 5291997
PMID: 28158973
DOI: 10.1186/s12870-017-0989-3

[…] Molecular modeling was conducted to evaluate the molecular details of CaM and CML proteins. The Geno3d software [] was used to construct the molecular structure of CaM and CMLs. The protein sequence of AtCaM1 and AtCML1 was utilized as the query sequence to search the model. Following statistica […]


Biophysical Studies of the Induced Dimerization of Human VEGF Receptor 1 Binding Domain by Divalent Metals Competing with VEGF A

PLoS One
PMCID: 5152890
PMID: 27942001
DOI: 10.1371/journal.pone.0167755
call_split See protocol

[…] . To crosscheck its validity, other models were performed by using the structure of VEGFR2d3 as template (3S37), on two other servers, CPHmodels3.2 ( [], and Geno3D ( []. A fourth model was obtained from pGenThreader ( [] using the structure of VEGFR2d2d3 (2X1W). Accuracy of models was evaluat […]


Siropins, novel serine protease inhibitors from gut microbiota acting on human proteases involved in inflammatory bowel diseases

Microb Cell Fact
PMCID: 5127057
PMID: 27894344
DOI: 10.1186/s12934-016-0596-2
call_split See protocol

[…] -acid sequence was done using the program ClustalW [] and the figure rendering was done using the ESPript sequence analysis server []. The 3D homology model of Siropin 1 and 2 was generated using the Geno3D server, and images were rendered by using VIEWERLITEâ„¢ 5.0. […]

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GENO3D institution(s)
Biology institute and Protein chemistry, Bioinformatics and structural NMR, Lyon, France
GENO3D funding source(s)
This work was supported by CNRS; University Lyon 1; ANRS.

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