GENO3D specifications

Information


Unique identifier OMICS_13613
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data Protein sequence
Output data 3D models
Output format PDB
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Rhiju Das <>

GENO3D article

GENO3D citations

 (2)
2013
PMCID: 3667074

[…] to generate a protein sequence multiple alignments with orthologs using clustal w [68] and boxshade 3.21 (http://www.ch.embnet.org/index.html) to visualize conserved regions in the alignment. the geno3d server [69] was used to predict secondary structure agreement to validate template selection and alignment by generating a three-dimensional structure and a model for the molecular surface […]

2012
PMCID: 3458964

[…] was calculated and compared to the gc content of the whole genome. the formula used for the calculations was that described by karlin et al., 2001 [48]., protein sequences were 3d modeled with geno3d [49] and molecular representation were performed by pymol [50]., sdr : short-chain dehydrogenase/reductase(s); sdh : sorbitol dehydrogenase(s); abc : atp-binding cassette; mdr : medium-chain […]

GENO3D institution(s)
Biology institute and Protein chemistry, Bioinformatics and structural NMR, Lyon, France
GENO3D funding source(s)
This work was supported by CNRS; University Lyon 1; ANRS.

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