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Protocols

GenoBase specifications

Information


Unique identifier OMICS_06418
Name GenoBase
Restrictions to use None
Maintained No

Taxon


  • Bacteria
    • Escherichia coli

Publication for GenoBase

GenoBase citations

 (3)
call_split

Comprehensive study of liposome assisted synthesis of membrane proteins using a reconstituted cell free translation system

2015
Sci Rep
PMCID: 4678891
PMID: 26667602
DOI: 10.1038/srep18025
call_split See protocol

[…] The molecular weight, pI, and amino acid content were calculated from the amino acid sequences obtained from GenoBase (http://ecoli.naist.jp/GB8/). ő§ransmembrane domains were predicted using TMHMM ver. 2.0 (http://www.cbs.dtu.dk/services/TMHMM/). Stepwise multiple linear regression analysis was conducted as […]

library_books

The 2015 Nucleic Acids Research Database Issue and Molecular Biology Database Collection

2014
Nucleic Acids Res
PMCID: 4383995
PMID: 25593347
DOI: 10.1093/nar/gku1241

[…] king Analysis Resource Catalogue, BioAssay Research Database, and Breast Cancer Campaign Tissue Bank (see Table ). Among the updates on previously described resources (Table ), it is worth mentioning GenoBase, a description of the renowned Keio collection of Escherichia coli K-12 single-gene knockout mutants and associated bioinformatics resources (); PlasmoGEM, a collection of DNA vectors and dat […]

library_books

Genomes of Helicobacter pylori from native Peruvians suggest admixture of ancestral and modern lineages and reveal a western type cag pathogenicity island

2006
BMC Genomics
PMCID: 1553449
PMID: 16872520
DOI: 10.1186/1471-2164-7-191

[…] DNA sequencer). Cluster analysis of DNA profiles was conducted on the basis of fingerprint characteristics. All the data obtained through molecular genotyping and DNA profiling were deposited in the genoBASE pylori database []. The genoBASE pylori server was queried for comparative analyses.Genotyping based on candidate genes oipA and babB was carried out as described [-]. Short stretches of oipA […]

Citations

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GenoBase institution(s)
Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara, Japan; Mitsubishi Space Software Co, LTD, Amagasaki, Hyougo, Japan; Institute of Advanced Biosciences, Keio University, Tsuruoka, Japan; Axiohelix, Okinawa Sangyo Shien Center, Naha-shi, Okinawa, Japan; Department of Computer Science, Purdue University, West Lafayette, IN, USA; Biolog, Inc, Hayward, CA, USA; Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, USA; Department of Biological Sciences, Purdue University, West Lafayette, IN, USA; Department Biochemistry and Molecular Biology, University of Miami, Miami, FL, USA; Department of Bioinformatics, Ritsumeikan University, Kusatsu, Shiga, Japan,Department of Microbiology and Immunobiology, Harvard Medical School, Boston, MA, USA

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