GenoExp specifications

Information


Unique identifier OMICS_07616
Name GenoExp
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages MATLAB
License GNU Lesser General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Eran Segal

Information


Unique identifier OMICS_07616
Name GenoExp
Interface Web user interface
Restrictions to use None
Programming languages MATLAB
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Eran Segal

Publication for GenoExp

GenoExp citation

library_books

Prediction of gene expression with cis SNPs using mixed models and regularization methods

2017
BMC Genomics
PMCID: 5425981
PMID: 28490319
DOI: 10.1186/s12864-017-3759-6

[…] and BSLMM for highly predictive genes (e.g. with R 2 ≥ 0.30); whereas for these genes (R 2 ≥ 0.30) LMM achieves a smaller R 2. We further validate this finding using another gene expression data from GenoExp []. The GenoExp data was obtained from the HapMap Phase II data set [], include 210 unrelated Epstein-Barr-virus-transformed lymphoblastoid cell line samples and 15,427 genes (with an average […]

GenoExp institution(s)
Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel

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