Genome annotation software tools and databases

Genome annotation steps

Bioinformatics tools

Databases

The falling cost of genome sequencing is having a marked impact on the research community with respect to which genomes are sequenced and how and where they are annotated. Genome annotation projects have generally become small-scale affairs that are often carried out by an…

Genome annotation software tools and databases

Most Recent Tools

Web app
LTRclassifier LTRclassifier

LTRclassifier

Classifies plant long terminal repeat (LTR) retrotransposons in their…

Classifies plant long terminal repeat (LTR) retrotransposons in their respective superfamily, and provides automatically a basic functional annotation of these elements. LTRclassifier was tested on…

Web app
iOri-Human iOri-Human

iOri-Human

Identifies human origin of replication. iOri-Human reflects the global sequence…

Identifies human origin of replication. iOri-Human reflects the global sequence patterns in DNA as well as its local sequence patterns through the pseudo nucleotide composition that 96…

Web app
iROS-gPseKNC iROS-gPseKNC

iROS-gPseKNC

Incorporates the dinucleotide position-specific propensity information into the…

Incorporates the dinucleotide position-specific propensity information into the general pseudo nucleotide composition and uses the random forest classifier. iROS-gPseKNC can be used to identify the…

PhagesDB PhagesDB

PhagesDB

Collects and shares data, pictures, protocols, and analysis tools associated…

Collects and shares data, pictures, protocols, and analysis tools associated with the discovery, sequencing, and characterization of mycobacteriophages viruses that infect the Mycobacteria. PhagesDB…

Most Popular Tools

Web app
ZENBU ZENBU

ZENBU

Enables data exploration through "on-demand" data processing and…

Enables data exploration through "on-demand" data processing and interactive linked-visualizationsthus enabling concurrent views from the same mere primary sequence alignment data which…

Desktop app
MiRPara MiRPara

MiRPara

A SVM-based software tool for prediction of most probable microRNA coding…

A SVM-based software tool for prediction of most probable microRNA coding regions in genome scale sequences. miRPara is an effective tool for locating miRNAs coding regions in genome sequences and…

EuMicrobedbLite EuMicrobedbLite

EuMicrobedbLite

A light weight comprehensive genome resource and sequence analysis platform for…

A light weight comprehensive genome resource and sequence analysis platform for oomycete organisms. EuMicrobedbLite is a successor of the VBI Microbial Database (VMD) that was built using the Genome…

JASPAR JASPAR

JASPAR

An open-access database storing curated, non-redundant transcription factor…

An open-access database storing curated, non-redundant transcription factor (TF) binding profiles representing transcription factor binding preferences as position frequency matrices for multiple…

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