Genome annotation software tools and databases

Genome annotation is a key process for identifying the coding and non-coding regions of a genome, gene locations and functions. Analysis of DNA sequence with genome annotation software tools allow finding and mapping genes, exons-introns, regulatory elements, repeats and…

Genome annotation steps

Bioinformatics tools

Databases

Most recent bioinformatics tools

ProGENI
Desktop

ProGENI Prioritization of Genes Enhanced with Network Information

Finds relationship between basal gene expression and drug response. ProGENI…

Finds relationship between basal gene expression and drug response. ProGENI incorporates prior knowledge in the form of an experimentally verified network of protein–protein interactions (PPIs) and…

PanelApp
Web

PanelApp

Permits users to share, download, view and evaluate gene panels. PanalApp aims…

Permits users to share, download, view and evaluate gene panels. PanalApp aims to build a list of genes that can be used to assist diagnose a rare disease. It can be used as a support to identify the…

Beacon Network
Dataset

Beacon Network

Allows users to share genetic variant data sets collected from large-scale…

Allows users to share genetic variant data sets collected from large-scale population-sequencing projects, clinical diagnostic settings, and variant curation efforts. Beacon Network permits users to…

iGenomes
Dataset

iGenomes

Provides a set of reference sequences and annotation files for common…

Provides a set of reference sequences and annotation files for common organisms. iGenomes has been constructed with data from Ensembl, NCBI and UCSC. Chromosome names have been simplified to be…

Most popular analytical software and databases

ZENBU
Web

ZENBU

Enables data exploration through "on-demand" data processing and…

Enables data exploration through "on-demand" data processing and interactive linked-visualizationsthus enabling concurrent views from the same mere primary sequence alignment data which…

MiRPara
Desktop

MiRPara

A SVM-based software tool for prediction of most probable microRNA coding…

A SVM-based software tool for prediction of most probable microRNA coding regions in genome scale sequences. miRPara is an effective tool for locating miRNAs coding regions in genome sequences and…

EuMicrobedbLite
Dataset

EuMicrobedbLite

A light weight comprehensive genome resource and sequence analysis platform for…

A light weight comprehensive genome resource and sequence analysis platform for oomycete organisms. EuMicrobedbLite is a successor of the VBI Microbial Database (VMD) that was built using the Genome…

JASPAR
Dataset

JASPAR

An open-access database storing curated, non-redundant transcription factor…

An open-access database storing curated, non-redundant transcription factor (TF) binding profiles representing transcription factor binding preferences as position frequency matrices for multiple…

Curators for Genome annotation

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