Genome annotation software tools and databases

Genome annotation steps

Bioinformatics tools

Databases

The falling cost of genome sequencing is having a marked impact on the research community with respect to which genomes are sequenced and how and where they are annotated. Genome annotation projects have generally become small-scale affairs that are often carried out by an…

Genome annotation software tools and databases

Most Recent Tools

Borreliella…
Data

Borreliella burgdorferi

Contains a linear chromosome of 910,725 base pairs and at least 17 linear and…

Contains a linear chromosome of 910,725 base pairs and at least 17 linear and circular plasmids with a combined size of more than 533,000 base pairs. Borrelia burgdorferi is the causative agent of…

Bordetella…
Data

Bordetella pertussis

Includes the genome of Bordetella parapertussis 12822 (4,773,551 bp; 4,404…

Includes the genome of Bordetella parapertussis 12822 (4,773,551 bp; 4,404 genes). Bordetella pertussis is related to Gram-negative β-proteobacteria that colonize the respiratory tracts of mammals.…

Bordetella…
Data

Bordetella parapertussis

Includes the whole genome of Bordetella parapertussis Bpp5. The bacteria can…

Includes the whole genome of Bordetella parapertussis Bpp5. The bacteria can cause bronchitis and others respiratory diseases. The classical Bordetella subspecies are phylogenetically closely…

Bordetella…
Data

Bordetella bronchiseptica

Contains the whole genome of Bordetella bronchiseptica 253. Bordetella…

Contains the whole genome of Bordetella bronchiseptica 253. Bordetella bronchiseptica causes bronchitis and other respiratory diseases. The classical Bordetella subspecies are phylogenetically…

Most Popular Tools

ZENBU
Web

ZENBU

Enables data exploration through "on-demand" data processing and…

Enables data exploration through "on-demand" data processing and interactive linked-visualizationsthus enabling concurrent views from the same mere primary sequence alignment data which…

MiRPara
Desktop

MiRPara

A SVM-based software tool for prediction of most probable microRNA coding…

A SVM-based software tool for prediction of most probable microRNA coding regions in genome scale sequences. miRPara is an effective tool for locating miRNAs coding regions in genome sequences and…

EuMicrobedbLite
Data

EuMicrobedbLite

A light weight comprehensive genome resource and sequence analysis platform for…

A light weight comprehensive genome resource and sequence analysis platform for oomycete organisms. EuMicrobedbLite is a successor of the VBI Microbial Database (VMD) that was built using the Genome…

JASPAR
Data

JASPAR

An open-access database storing curated, non-redundant transcription factor…

An open-access database storing curated, non-redundant transcription factor (TF) binding profiles representing transcription factor binding preferences as position frequency matrices for multiple…

Curators for Genome annotation

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