Genome annotation software tools and databases

Genome annotation is a key process for identifying the coding and non-coding regions of a genome, gene locations and functions. Analysis of DNA sequence with genome annotation software tools allow finding and mapping genes, exons-introns, regulatory elements, repeats and…

Genome annotation steps

Bioinformatics tools

Databases

Most recent bioinformatics tools

MG Workbench
Dataset

MG Workbench Microbial Genome Workbench

Explores bacterial and archaeal genomes. MG Workbench is a database designed to…

Explores bacterial and archaeal genomes. MG Workbench is a database designed to focus on intra-genomic and inter-genomic comparison of genes and proteins.

MitoFish
Dataset

MitoFish Mitochondrial Genome Database of Fish

Provides precise mitogenomic annotations. MitoFish is an online resource that…

Provides precise mitogenomic annotations. MitoFish is an online resource that collects fish mitogenomic sequence data. It offers four main functions: species/taxonomy search, sequence similarity…

Miyakogusa
Dataset

Miyakogusa

Provides a database of Lotus japonicus. Miyakogusa is an online resource that…

Provides a database of Lotus japonicus. Miyakogusa is an online resource that permits to search on lotus genes or to analyse data. The L. japonicus genome assembly was constructed by a hybrid…

MMDBJ
Dataset

MMDBJ Mouse Microsatellite Data Base of Japan

Accumulates data on genetic variations of microsatellite loci in Japanese wild…

Accumulates data on genetic variations of microsatellite loci in Japanese wild mice-derived inbred strains, MSM and JF1. MMDBJ is an online resource that provides information about Simple Sequence…

Most popular analytical software and databases

ZENBU
Web

ZENBU

Enables data exploration through "on-demand" data processing and…

Enables data exploration through "on-demand" data processing and interactive linked-visualizationsthus enabling concurrent views from the same mere primary sequence alignment data which…

MiRPara
Desktop

MiRPara

A SVM-based software tool for prediction of most probable microRNA coding…

A SVM-based software tool for prediction of most probable microRNA coding regions in genome scale sequences. miRPara is an effective tool for locating miRNAs coding regions in genome sequences and…

EuMicrobedbLite
Dataset

EuMicrobedbLite

A light weight comprehensive genome resource and sequence analysis platform for…

A light weight comprehensive genome resource and sequence analysis platform for oomycete organisms. EuMicrobedbLite is a successor of the VBI Microbial Database (VMD) that was built using the Genome…

JASPAR
Dataset

JASPAR

An open-access database storing curated, non-redundant transcription factor…

An open-access database storing curated, non-redundant transcription factor (TF) binding profiles representing transcription factor binding preferences as position frequency matrices for multiple…

Curators for Genome annotation

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