Genome annotation software tools and databases

Genome annotation steps

Bioinformatics tools

Databases

The falling cost of genome sequencing is having a marked impact on the research community with respect to which genomes are sequenced and how and where they are annotated. Genome annotation projects have generally become small-scale affairs that are often carried out by an…

Genome annotation software tools and databases

Most Recent Tools

Animal Genome…
Data

Animal Genome Size Database

Provides up to the minute stats on the number of species and records it…

Provides up to the minute stats on the number of species and records it contains. The Animal Genome Size Database is a comprehensive catalogue of animal genome size data. Haploid DNA contents…

OncoScore
Desktop
Web

OncoScore

Ranks genes according to their association with cancer, based on available…

Ranks genes according to their association with cancer, based on available biomedical literature. OncoScore is a bioinformatics text-mining tool capable of automatically scanning the biomedical…

GC-Specific…
Desktop

GC-Specific MAKER

Predicts new and improved gene models and assesses the biological significance…

Predicts new and improved gene models and assesses the biological significance of this method in Oryza sativa. GC-specific MAKER is an annotation protocol that makes use of genes with high and low GC…

Cleaver
Desktop

Cleaver

Analyses restriction digestion of groups of orthologous DNA sequences…

Analyses restriction digestion of groups of orthologous DNA sequences simultaneously to allow identification of differences in restriction pattern among the fragments derived from different taxa.…

Most Popular Tools

ZENBU
Web

ZENBU

Enables data exploration through "on-demand" data processing and…

Enables data exploration through "on-demand" data processing and interactive linked-visualizationsthus enabling concurrent views from the same mere primary sequence alignment data which…

MiRPara
Desktop

MiRPara

A SVM-based software tool for prediction of most probable microRNA coding…

A SVM-based software tool for prediction of most probable microRNA coding regions in genome scale sequences. miRPara is an effective tool for locating miRNAs coding regions in genome sequences and…

EuMicrobedbLite
Data

EuMicrobedbLite

A light weight comprehensive genome resource and sequence analysis platform for…

A light weight comprehensive genome resource and sequence analysis platform for oomycete organisms. EuMicrobedbLite is a successor of the VBI Microbial Database (VMD) that was built using the Genome…

JASPAR
Data

JASPAR

An open-access database storing curated, non-redundant transcription factor…

An open-access database storing curated, non-redundant transcription factor (TF) binding profiles representing transcription factor binding preferences as position frequency matrices for multiple…

Curators for Genome annotation

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