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Genome assemblers (Sanger sequencing analysis)

De novo genome assemblers for Sanger sequencing analysis.

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MIRA
Desktop

MIRA Mimicking Intelligent Read Assembly

Uses a Swiss army knife of sequence assembly developed and used in the past 16…

Uses a Swiss army knife of sequence assembly developed and used in the past 16 years to get assembly jobs done efficiently - and especially accurately. MIRA is a whole genome shotgun (WGS) and EST…

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Staden Package
Desktop

Staden Package

A fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and…

A fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin). The package also covers most of the standard sequence analysis tasks such as restriction site…

ARACHNE
Desktop

ARACHNE

A package for assembling genome sequence using paired-end whole-genome shotgun…

A package for assembling genome sequence using paired-end whole-genome shotgun reads. ARACHNE has several key features, including an efficient and sensitive procedure for finding read overlaps, a…

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Phrap
Desktop

Phrap

Allows to compare, align, and assemble large sets of DNA sequences. PHRAP uses…

Allows to compare, align, and assemble large sets of DNA sequences. PHRAP uses a banded version of the Smith-Waterman-Gotoh algorithm to do pairwise comparisons of the sequences. It compares…

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iAssembler
Desktop

iAssembler

Assembles large-scale expressed sequence tags (EST) datasets and automatically…

Assembles large-scale expressed sequence tags (EST) datasets and automatically identifies and correct assembly errors. iAssembler employs an iterative assembly strategy and automated assembly error…

CAP3
Web

CAP3

The third generation of the CAP sequence assembly program. The CAP3 program…

The third generation of the CAP sequence assembly program. The CAP3 program includes a number of improvements and new features. The program has a capability to clip 58 and 38 low-quality regions of…

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AMOS
Desktop

AMOS

Uses a collection of tools and class interfaces for the assembly of DNA reads.…

Uses a collection of tools and class interfaces for the assembly of DNA reads. AMOS includes a robust infrastructure, modular assembly pipelines, and tools for overlapping, consensus generation,…

CAP EST…
Web

CAP EST Assembler

Allows to assemble sequence fragments interactively online. CAP EST Assembler…

Allows to assemble sequence fragments interactively online. CAP EST Assembler is a software optimized for Expressed Sequence Tag (EST) assembly. The CAP program uses a dynamic programming algorithm…

DNA Dragon
Desktop

DNA Dragon

Allows sequence assembly and tracing of data and Illumina and Roche 454…

Allows sequence assembly and tracing of data and Illumina and Roche 454 flowgrams into contigs. DNA Dragon is a contig assembler that supports several formats, including FASTA, GenBank or EMBL, as…

SeqAssem
Desktop

SeqAssem

Contig sequence assembly software.

Contig sequence assembly software.

SeqMan Pro
Desktop

SeqMan Pro

Provides Sanger data sequence assembly and analysis. SeqMan Pro is an…

Provides Sanger data sequence assembly and analysis. SeqMan Pro is an application that provides next-generation visualizations and analysis of projects. It helps to discover variants, analyzes…

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Celera…
Desktop

Celera assembler

Identifies allelic variation given a Whole Genome Shotgun (WGS) assembly of…

Identifies allelic variation given a Whole Genome Shotgun (WGS) assembly of haploid sequences. Celera assembler is an algorithm to produce a set of haploid consensus sequences rather than a single…

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