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Genome assemblers (Sanger sequencing analysis)

Sanger sequencing software tools

De novo genome assemblers for Sanger sequencing analysis.

AMOS

OMIC_00008

AMOS

A collection of tools and class interfaces for the assembly of DNA reads.

A collection of tools and class interfaces for the assembly of DNA reads.

ARACHNE

OMIC_01812

ARACHNE

It was designed for long Sanger-chemistry reads.

It was designed for long Sanger-chemistry reads.

Celera assembler

OMIC_00009

Celera assembler

A de novo whole-genome shotgun (WGS) DNA sequence assembler.

A de novo whole-genome shotgun (WGS) DNA sequence assembler.

DNA Dragon

OMIC_05329

DNA Dragon

Assembles sequences (FASTA, GenBank etc.), trace data (ABI, SCF, AB1), and Illumina and…

Assembles sequences (FASTA, GenBank etc.), trace data (ABI, SCF, AB1), and Illumina and Roche 454 flowgrams into contigs.

Mimicking Intelligent Read Assembly

OMIC_00023

Mimicking Intelligent Read Assembly
MIRA

Sequence assembler and mapper for whole genome shotgun and EST/RNASeq sequencing data.

Sequence assembler and mapper for whole genome shotgun and EST/RNASeq sequencing data.

Phrap

OMIC_01429

Phrap

A program for assembling shotgun DNA sequence data.

A program for assembling shotgun DNA sequence data.

SeqAssem

OMIC_05330

SeqAssem

Contig sequence assembly software.

Contig sequence assembly software.

SeqMan Pro

OMIC_01810

SeqMan Pro

Offers quick and accurate sequence assembly and analysis of Sanger data.

Offers quick and accurate sequence assembly and analysis of Sanger data.

Staden Package

OMIC_00894

Staden Package

A fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis…

A fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin). The package also covers most of the standard sequence analysis tasks such as restriction site searching, translation, pattern searching, comparison,…