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Genome Bisulfite Sequencing Analyser GBSA

An open-source software tool capable of analysing whole-genome bisulfite sequencing data with either a gene-centric or gene-independent focus. GBSA’s output can be easily integrated with other high-throughput sequencing data, such as RNA-Seq or ChIP-seq, to elucidate the role of methylated intergenic regions in gene regulation. In essence, GBSA allows an investigator to explore not only known loci but also all the genomic regions, for which methylation studies could lead to the discovery of new regulatory mechanisms.

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1 user review

1 user review

nicolas's avatar image

nicolas

Good features and nice user interface

GBSA forum

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GBSA versioning

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GBSA classification

GBSA specifications

Software type:
Package/Module
Restrictions to use:
Academic or non-commercial use
Output format:
Bedgraph, tab-delimited text, images, gene browser
Programming languages:
Python
Stability:
Stable
Interface:
Command line interface, Graphical user interface
Input format:
BSP, BS-Seeker (text)
Operating system:
Unix/Linux, Windows
Computer skills:
Advanced
Maintained:
Yes

GBSA support

Maintainer

  • Richie Soong <>

Credits

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Publications

Institution(s)

Cancer Science Institute of Singapore, National University of Singapore, Singapore, Singapore; Department of Pathology, National University of Singapore, Singapore, Singapore

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