Genome Compiler specifications


Unique identifier OMICS_08754
Name Genome Compiler
Interface Web user interface
Restrictions to use Academic or non-commercial use
Parallelization MapReduce
Computer skills Basic
Stability Stable
High performance computing Yes
Maintained Yes


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Genome Compiler in publications

PMCID: 5805296
PMID: 29420585
DOI: 10.1371/journal.pone.0192277

[…] online services provided by the national center for biotechnology information (ncbi) []. multiple alignment analysis was performed using bioedit software in combination with genedoc, dna club and genome compiler., to test if tcs resistance of bacterial pathogen can be inferred from the presence of putative tcs resistance genes, 17 different laboratory strains were selected for which the whole […]

PMCID: 4884673
PMID: 27237829
DOI: 10.1186/s40504-016-0039-1

[…] by the “bioluminescence project”, which started in 2011 as a citizen science initiative at the hackerspace biocurious in sunnyvale, california. somehow, before long, the biotech-software startup genome compiler corporation also got involved. in the first half of 2013, three biohackers affiliated with biocurious as well as with genome compiler captured the public imagination by conducting […]

PMCID: 4752604
PMID: 26861020
DOI: 10.1128/mBio.01990-15

[…] the files are provided in .gkb format and can be viewed using a variety of genome browser software (examples of freely available genome browsers include artemis, genome compiler, and clc sequence viewer). the rna-seq data files have been deposited in geo under accession number gse74936. newly identified srnas (i.e., the tsr srnas) have been deposited […]

PMCID: 3684516
PMID: 23663447
DOI: 10.1186/1754-1611-7-13

[…] number of survey participants, although most indicated past use of these software tools. lower but increasing-over-time usage rates were reported for the j5 dna assembly (16% current, 9% past), genome compiler (11% current, 6% past), and genocad (10% current, 6% past) software tools. in addition to the software tools that were listed, survey participants providing free text responses (n = […]

PMCID: 3564264
PMID: 23340847
DOI: 10.1038/msb.2012.66

[…] libraries of genomes. traditional gene editors such as vector nti and seqbuilder are largely inadequate for such purposes. however, new design tools and software suites such as j5 (), clotho (), and genome compiler ( provide better data management and user interfaces for the design of large operons and whole genomes., although recordkeeping is important, […]

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Genome Compiler institution(s)
Genome Compiler Corporation, CA, USA

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