Genome editing software tools and databases

Programmable nucleases - including zinc-finger nucleases (ZFNs), transcription activator-like effector nucleases (TALENs) and RNA-guided engineered nucleases (RGENs) derived from the bacterial clustered regularly interspaced short palindromic repeat (CRISPR)-Cas…

Genome editing steps

Bioinformatics tools

Biological databases

Genome editing software tools and databases

Most Recent Tools

predictSGRNA
Desktop

predictSGRNA

Enables to predict single guide RNA (sgRNA) target sequences efficiency.…

Enables to predict single guide RNA (sgRNA) target sequences efficiency. PredictSGRNA implements an algorithm based on position-dependent dinucleotide model. This tool is an R package implementing…

CRISPR…
Dataset

CRISPR Knockout Guide Designer

Allows users to search from over 100,000 genomes and 9,000 species in order to…

Allows users to search from over 100,000 genomes and 9,000 species in order to make a Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) guide for gene knockout. CRISPR Knockout Guide…

PITCh designer
Web

PITCh designer Precise Integration into Target Chromosome designer

Designs and performs PITCh knock-in. PITCh designer is a streamlined pipeline…

Designs and performs PITCh knock-in. PITCh designer is a streamlined pipeline developed to automatically design the appropriate microhomologies and the primers to construct locus-specific donor…

GATExplorer
Dataset

GATExplorer Genomic and Transcriptomic Explorer

Contains a gene loci browser with nucleotide level mappings of oligo probes…

Contains a gene loci browser with nucleotide level mappings of oligo probes from expression microarrays. GATExplorer enables interactive exploration of gene loci, transcripts and exons of human,…

Curators for Genome editing

  • Mikhail Zaslavskiy's avatar image
    Mikhail Zaslavskiy
    Consultant, Paris, France

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