Genome editing software tools and databases

Programmable nucleases - including zinc-finger nucleases (ZFNs), transcription activator-like effector nucleases (TALENs) and RNA-guided engineered nucleases (RGENs) derived from the bacterial clustered regularly interspaced short palindromic repeat (CRISPR)-Cas…

Genome editing steps

Bioinformatics tools

Biological databases

Most recent bioinformatics tools

FlashFry
Desktop

FlashFry

Allows user to discover and characterize Clustered Regularly Interspaced Short…

Allows user to discover and characterize Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) guide sequences. FlashFry generates a block-compressed binary database of all potential…

CrossCheck
Dataset

CrossCheck

Provides a centralized repository for published datasets. CrossCheck allows…

Provides a centralized repository for published datasets. CrossCheck allows users to compare a user-defined list of gene symbols with the software reference database. The database contains over…

Anti-CRISPRdb
Dataset

Anti-CRISPRdb

Provides access to data about anti-CRISPR proteins. Anti-CRISPRdb is an online…

Provides access to data about anti-CRISPR proteins. Anti-CRISPRdb is an online resource that contains more than 400 anti-CRISPR proteins tested by experimental and bioinformatics methods. The…

CASPER
Desktop

CASPER CRISPR Associated Software for Pathway Engineering and Research

Allows analysis of on and off-target activity in any organism with any Cas…

Allows analysis of on and off-target activity in any organism with any Cas enzyme. CASPER is a method that implements flexible algorithms to guide precise genome editing. The software can perform…

Curators for Genome editing

  • Mikhail Zaslavskiy's avatar image
    Mikhail Zaslavskiy
    Consultant, Paris, France

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