Genome editing software tools and databases

Genome editing steps

Programmable nucleases - including zinc-finger nucleases (ZFNs), transcription activator-like effector nucleases (TALENs) and RNA-guided engineered nucleases (RGENs) derived from the bacterial clustered regularly interspaced short palindromic repeat (CRISPR)-Cas…

Genome editing software tools and databases

Most Recent Tools

Web app
CRISPR RNA-Targeting CRISPR RNA-Targeting

CRISPR-RT CRISPR RNA-Targeting

Helps biologists to design the crRNA with improved target specificity for the…

Helps biologists to design the crRNA with improved target specificity for the CRISPR-C2c2 system. CRISPR-RT is a web service that allows a user to upload an RNA sequence, set specifications according…

Desktop app
FociCounter FociCounter

FociCounter

Allows determination of the number of foci in a single cell, a focus intensity…

Allows determination of the number of foci in a single cell, a focus intensity per cell, as well as a cell intensity. FociCounter was tested by analysing gamma-H2AX foci in CHO and MO59K cells…

Web app
NEBcutter NEBcutter

NEBcutter

Analyzes DNA sequences for the presence of restriction enzyme sites in a…

Analyzes DNA sequences for the presence of restriction enzyme sites in a convenient and easy to use manner. NEBcutter consists of a set of cooperating program modules. The module that finds…

Web app
Breaking-Cas Breaking-Cas

Breaking-Cas

Detects putative sgRNA off-targets in CRISPR/Cas applications. BreakingCas…

Detects putative sgRNA off-targets in CRISPR/Cas applications. BreakingCas allows working with all eukaryotic genomes available in the ENSEMBL database, while other existing tools can only work with…

Curators for Genome editing

  • Mikhail Zaslavskiy's avatar image
    Mikhail Zaslavskiy
    Consultant, Paris, France

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