Main logo
?
tutorial arrow
×
Submit new tools
Share tools covering the current topic. Provide easy-to-follow guidelines to improve their usability.
Share new tools with the community
Sign up for free to promote the availability of bioinformatics tools

Genome editing assessment software tools | Genome engineering

Clustered regularly interspaced short palindromic repeats (CRISPR)-based technologies have revolutionized human genome engineering and opened countless possibilities to basic science, synthetic biology and gene therapy. Albeit the enormous potential…
CrispRVariants
Web
Desktop

CrispRVariants

Resolves and localizes individual mutant alleles with respect to the…

Resolves and localizes individual mutant alleles with respect to the endonuclease cut site. CrispRVariants quantifies and visualizes individual variant alleles from either traditional Sanger…

Microhomology-P…
Web

Microhomology-Predictor

Allows to predict nuclease induced frameshift. It is a scoring system to…

Allows to predict nuclease induced frameshift. It is a scoring system to estimate the frequency of microhomology-associated deletions at nuclease target sites.

Cas-Analyzer
Web

Cas-Analyzer

A JavaScript-based instant assessment tool for high-throughput sequencing data…

A JavaScript-based instant assessment tool for high-throughput sequencing data for genome edited cells. Because Cas-Analyzer is completely used at a client-side web browser on-the-fly, there is no…

BATCH-GE
Desktop

BATCH-GE

A tool for batch analysis of next-generation sequencing (NGS) data for genome…

A tool for batch analysis of next-generation sequencing (NGS) data for genome editing assessment. BATCH-GE detects and reports indel mutations and other precise genome editing events and calculates…

GeneOptProg
Desktop

GeneOptProg

Offers high potential for gene optimization and further researches in gene…

Offers high potential for gene optimization and further researches in gene expression. GeneOptProg is a demonstrative program and a standalone executable program that uses HEGP, DHEG, and NN to…

TIDE
Desktop
Web

TIDE Tracking of Indels by DEcomposition

A web tool to rapidly assess genome editing by CRISPR-Cas9 of a target locus…

A web tool to rapidly assess genome editing by CRISPR-Cas9 of a target locus determined by a guide RNA (sgRNA). Based on the quantitative sequence trace data from two standard capillary sequencing…

CRISPR-DAV
Desktop

CRISPR-DAV CRISPR Data Analysis and Visualization

Allows analysis and visualization of Clustered Regularly Interspaced Short…

Allows analysis and visualization of Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) next generation sequencing (NGS) data. CRISPR-DAV is a pipeline that utilizes Burrows-Wheeler…

CRISPR-GA
Web

CRISPR-GA CRISPR Genome Analyzer

A platform to assess the quality of a genome editing experiment only with three…

A platform to assess the quality of a genome editing experiment only with three mouse clicks. The method evaluates next-generation data to quantify and characterize insertions, deletions and…

Fragment…
Web

Fragment Analysis for CE instrument

Provides automatic quantitative fragment analysis for the output data from…

Provides automatic quantitative fragment analysis for the output data from Capillary Electrophoresis (CE). Fragment Analysis for CE instrument is a web platform that offers analysis (including…

CRISPResso
Desktop
Web

CRISPResso

Allows the quantification of both non-homologous end joining (NHEJ) and…

Allows the quantification of both non-homologous end joining (NHEJ) and homologous directed repair (HDR) occurrences. CRISPResso is a software pipeline for the analysis of targeted CRISPR-Cas9 deep…

Information

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.