Genome Maps specifications

Information


Unique identifier OMICS_06400
Name Genome Maps
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Invertebrates
    • Bombyx mori
    • Caenorhabditis elegans
    • Dictyostelium discoideum
    • Drosophila melanogaster
    • Giardia intestinalis
    • Leishmania major
    • Plasmodium falciparum
  • Mammals
    • Bos taurus
  • Plants and Fungi
    • Arabidopsis thaliana
    • Aspergillus fumigatus
    • Glycine max
    • Hordeum vulgare
    • Populus trichocarpa
    • Saccharomyces cerevisiae
    • Schizosaccharomyces pombe
    • Vitis vinifera
    • Zea mays
  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus
    • Rattus norvegicus
  • Vertebrates
    • Danio rerio

Documentation


Maintainers


  • person_outline Joaquín Dopazo
  • person_outline Ignacio Medina
  • person_outline Francisco Salavert

Additional information


https://github.com/opencb/genome-maps/wiki

Publication for Genome Maps

Genome Maps citations

 (2)
library_books

A survey of best practices for RNA seq data analysis

2016
Genome Biol
PMCID: 4728800
PMID: 26813401
DOI: 10.1186/s13059-016-0881-8

[…] overage (read pileup), unnormalized (for example, total count) or normalized, using genome browsers such as the UCSC browser [], Integrative Genomics Viewer (IGV) [] (Figure S1a in Additional file ), Genome Maps [], or Savant []. Some visualization tools are specifically designed for visualizing multiple RNA-seq samples, such as RNAseqViewer [], which provides flexible ways to display the read abu […]

library_books

An integrated approach for genome annotation of the eukaryotic thermophile Chaetomium thermophilum

2014
Nucleic Acids Res
PMCID: 4267624
PMID: 25398899
DOI: 10.1093/nar/gku1147

[…] as well as the possibility to browse and conveniently visualize data is essential. Experimental data and updated reannotation data are publicly available at the EMBL Genome Browser database (based on Genome Maps ()) and can be accessed under: http://ct.bork.embl.de/ctbrowser/. The updated reannotation data are further available at NCBI (Bioproject ID PRJNA47065). Parallel to the reannotated genome […]

Genome Maps institution(s)
Department of Computational Genomics, Centro de Investigacion Principe Felipe (CIPF), Valencia, Spain; CIBER de Enfermedades Raras (CIBERER), Valencia, Spain; Genometra S.L., Valencia, Spain; Functional Genomics Node (INB) at CIPF, Valencia, Spain

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