GAAP specifications

Unique identifier:
OMICS_14137
Software type:
Pipeline/Workflow
Restrictions to use:
None
Input format:
FASTA, FASTQ
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Stability:
Stable
Name:
Genome-organization-framework Assisted Assembly Pipeline
Interface:
Command line interface
Input data:
Paired-end reads, contigs or scaffolds assembled by de novo DNA-Seq assembler, gene cluster files generated from genomes of a closely related species
Output data:
The cGOF genes of segments, the order and orientation of cGOF segments in reference genomes
Programming languages:
Python
Version:
1.0
Maintained:
Yes

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GAAP support

Documentation

Maintainer

  • Zhang Zhang <>

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Publications

Institution(s)

BIG Data Center, Beijing Institute of Genomics (BIG), Chinese Academy of Sciences, Beijing, China; CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China; University of Chinese Academy of Sciences, Beijing, China

Funding source(s)

Strategic Priority Research Program of the Chinese Academy of Sciences [XDB13040500, XDA08020102]; National Key Research Program of China [2016YFC0901603, 2016YFB0201702, 2016YFC0901903]; National Programs for High Technology Research and Development [2015AA020108]; National Natural Science Foundation of China [31100915, 31200978, 31271386, 31471248]; International Partnership Program of the Chinese Academy of Sciences [153F11KYSB20160008]; Key Program of the Chinese Academy of Sciences [KJZD-EW-L14]; Key Technology Talent Program of the Chinese Academy of Sciences; The 100 Talent Program of the Chinese Academy of Sciences

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