Genome STRiP protocols

Genome STRiP specifications

Information


Unique identifier OMICS_05101
Name Genome STRiP
Alternative name Genome STRucture In Populations
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 2.0
Stability Stable
Registration required Yes
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Steven McCarroll <>

Additional information


http://software.broadinstitute.org/software/genomestrip/index.html

Publications for Genome STRucture In Populations

Genome STRiP IN pipeline

2017
PMCID: 5824824
PMID: 28985340
DOI: 10.1093/dnares/dsx037

[…] known deletions from7,9,10, qtl from qtldb. vcftools (v0.1.15) software and plink (v1.90p) software were used for analysing the vcf file., deletion discovery and genotyping were carried out using genome strip. after filtering, we report 8,480 large deletions with genotypes in 67 holsten, 27 jersey, and 81 nordic red cattle. the deletion size ranged from 199 bp to 773 kb with a mean of 4.5 kb […]

Genome STRiP institution(s)
Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA; Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, MA, USA; Department of Genetics, Harvard Medical School, Boston, MA, USA; Digital Biology Center, Bio-Rad Laboratories, Inc., Pleasanton, CA, USA
Genome STRiP funding source(s)
Supported by a grant from the National Human Genome Research Institute (R01 HG006855) and an additional grant from NHGRI (U01 HG006510).

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