Genome Surveyor statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool Genome Surveyor

Tool usage distribution map

This map represents all the scientific publications referring to Genome Surveyor per scientific context
info info

Associated diseases


Popular tool citations

chevron_left Cis-regulatory module prediction chevron_right
Want to access the full stats & trends on this tool?

Genome Surveyor specifications


Unique identifier OMICS_12881
Name Genome Surveyor
Interface Web user interface
Restrictions to use None
Input data CRM sequences
Input format FASTA
Computer skills Basic
Version 2.0
Stability No
Maintained No


This tool is not available anymore.

Publication for Genome Surveyor

Genome Surveyor citations


Use of a Drosophila Genome Wide Conserved Sequence Database to Identify Functionally Related cis Regulatory Enhancers

Dev Dyn
PMCID: 3243966
PMID: 22174086
DOI: 10.1002/dvdy.22728

[…] the Kr_CD1 gap enhancer as the input CSC (). It is important to point out that cis-Decoder search protocols make direct use of CSC information for enhancer prediction, while other resources, such as Genome Surveyor (Kazemian et al., ), use site conservation as a criterion, but do not provide information to infer enhancer boundaries. Given that multiple enhancer prediction programs that employ dif […]


Quantitative Analysis of the Drosophila Segmentation Regulatory Network Using Pattern Generating Potentials

PLoS Biol
PMCID: 2923081
PMID: 20808951
DOI: 10.1371/journal.pbio.1000456

[…] ). This computation is performed using a new “upward-downward” algorithm that scales linearly with the number of species. These single and multi-species motif profiles are made available through the “Genome Surveyor” interface at used published ChIP-on-chip data for eight TFs (BCD, CAD, GT, HB, KNI, KR, HKB, and TLL) , to compare the ability of different motif pr […]


A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one hybrid system

Nucleic Acids Res
PMCID: 2377422
PMID: 18332042
DOI: 10.1093/nar/gkn048

[…] ombinations (). In cases where this may be a concern, pairs of factors can be characterized in the B1H system using expression vectors developed for evaluating the specificity of heterodimers (,).The Genome Surveyor tool provides a fast, flexible and accessible platform to use the PWMs generated from our B1H data to identify CRMs in the fly genome. Other groups have previously used the D. melanoga […]

Want to access the full list of citations?
Genome Surveyor institution(s)
Department of Computer Science, University of Illinois at Urbana-Champaign, Urbana, IL, USA; Program in Gene Function and Expression, University of Massachusetts Medical School, Worcester, MA, USA; Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA; Department of Molecular Medicine, University of Massachusetts Medical School, Worcester, MA, USA
Genome Surveyor funding source(s)
This work was supported in part by grants by the National Institute of Health (grant R01HG004744-01, grant R01GM085233-01).

Genome Surveyor reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Genome Surveyor