Genome Surveyor statistics

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Citations per year

Number of citations per year for the bioinformatics software tool Genome Surveyor
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Tool usage distribution map

This map represents all the scientific publications referring to Genome Surveyor per scientific context
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Genome Surveyor specifications

Information


Unique identifier OMICS_12881
Name Genome Surveyor
Interface Web user interface
Restrictions to use None
Input data CRM sequences
Input format FASTA
Computer skills Basic
Version 2.0
Stability No
Maintained No

Maintainer


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Publication for Genome Surveyor

Genome Surveyor citations

 (3)
library_books

Use of a Drosophila Genome Wide Conserved Sequence Database to Identify Functionally Related cis Regulatory Enhancers

2011
Dev Dyn
PMCID: 3243966
PMID: 22174086
DOI: 10.1002/dvdy.22728

[…] the Kr_CD1 gap enhancer as the input CSC (). It is important to point out that cis-Decoder search protocols make direct use of CSC information for enhancer prediction, while other resources, such as Genome Surveyor (Kazemian et al., ), use site conservation as a criterion, but do not provide information to infer enhancer boundaries. Given that multiple enhancer prediction programs that employ dif […]

library_books

Quantitative Analysis of the Drosophila Segmentation Regulatory Network Using Pattern Generating Potentials

2010
PLoS Biol
PMCID: 2923081
PMID: 20808951
DOI: 10.1371/journal.pbio.1000456

[…] ). This computation is performed using a new “upward-downward” algorithm that scales linearly with the number of species. These single and multi-species motif profiles are made available through the “Genome Surveyor” interface at http://veda.cs.uiuc.edu/lmcrm/.We used published ChIP-on-chip data for eight TFs (BCD, CAD, GT, HB, KNI, KR, HKB, and TLL) , to compare the ability of different motif pr […]

library_books

A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one hybrid system

2008
Nucleic Acids Res
PMCID: 2377422
PMID: 18332042
DOI: 10.1093/nar/gkn048

[…] ombinations (). In cases where this may be a concern, pairs of factors can be characterized in the B1H system using expression vectors developed for evaluating the specificity of heterodimers (,).The Genome Surveyor tool provides a fast, flexible and accessible platform to use the PWMs generated from our B1H data to identify CRMs in the fly genome. Other groups have previously used the D. melanoga […]


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Genome Surveyor institution(s)
Department of Computer Science, University of Illinois at Urbana-Champaign, Urbana, IL, USA; Program in Gene Function and Expression, University of Massachusetts Medical School, Worcester, MA, USA; Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA; Department of Molecular Medicine, University of Massachusetts Medical School, Worcester, MA, USA
Genome Surveyor funding source(s)
This work was supported in part by grants by the National Institute of Health (grant R01HG004744-01, grant R01GM085233-01).

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