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GSV | A web-based genome synteny viewer for customized data

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An option for biologists to analyze genome synteny by uploading their own data set to a web-based comparative genome browser. Allows users to upload two data files for synteny visualization, the mandatory synteny file for specifying genomic positions of conserved regions and the optional genome annotation file. GSV presents two selected genomes in a single integrated view while still retaining the browsing flexibility necessary for exploring individual genomes. Users can browse and filter for genomic regions of interest, change the color or shape of each annotation track as well as re-order, hide or show the tracks dynamically. Additional features include downloadable images, immediate email notification and tracking of usage history. The entire GSV package is also light-weighted which enables easy local installation.

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GSV classification

GSV specifications

Unique identifier:
OMICS_00939
Interface:
Web user interface
Input data:
A mandatory genome synteny data file is required to use mGSV along with an optional genome annotation data file.
Programming languages:
Javascript, PHP
Computer skills:
Basic
Maintained:
Yes
Name:
Genome Synteny Viewer
Restrictions to use:
None
Output format:
Tab-delimited text
Database management system:
MySQL
Stability:
Stable

GSV support

Maintainer

  • Qunfeng Dong <>

Credits

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Publications

Institution(s)

Department of Biological Sciences, University of North Texas, Denton, TX, USA; Department of Computer Science and Engineering, University of North Texas, Denton, TX, USA

Funding source(s)

This work was supported in part by NIH grant 1RC2HG005806-01 and by the Junior Faculty Summer Research Fellowship at University of North Texas.

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