GGDC specifications
Information
| Unique identifier | OMICS_17873 |
|---|---|
| Name | Genome-To-Genome Distance Calculator |
| Interface | Web user interface |
| Restrictions to use | None |
| Input format | FASTA format |
| Computer skills | Basic |
| Version | 2.1 |
| Stability | Stable |
| Maintained | Yes |
Maintainer
- person_outline Markus Goker <>
GGDC article
Genome sequence-based species delimitation with confidence intervals and improved distance functions.
GGDC citations
(3)Pan-Genome Analysis Links the Hereditary Variation of Leptospirillum ferriphilum With Its Evolutionary Adaptation
[…] underlying genome blast distance phylogeny has been recognized to be a digital dna–dna hybridization (ddh) replacement (meier-kolthoff et al., 2013). in this study, an updated and enhanced platform genome-to-genome distance calculator (ggdc) v2.11 with improved ddh-prediction models and a set of novel features such as confidence-interval estimation was employed to calculate the intergenomic […]
Pseudomonas fluorescens F113 Can Produce a Second Flagellar Apparatus, Which Is Important for Plant Root Colonization
[…] perl scripts. protein homology was checked by blastp (camacho et al., 2009)., phylogenomic distances between genomes harboring the flagellar island and close relative genomes was calculated with the genome-to-genome distance calculator (ggdc) 2.1 web service http://ggdc.dsmz.de (meier-kolthoff et al., 2013). nucleotide sequence from each of the 45 orfs from the flagellar island were retrieved […]
Draft Genome Sequences of Three Strains of Bacteroides pyogenes Isolated from a Cat and Swine
[…] (gbdp)-based dna-dna hybridization (ddh) prediction (6), the pair of b. pyogenes jcm 6294t and jcm 6292 genome sequences show a 100% ddh value calculated by the genome-to-genome distance calculator (ggdc) web server (ggdc 2.0 [http://ggdc.dsmz.de/distcalc2.php]). on the other hand, the pairs of jcm 10003 and b. pyogenes jcm 6294t or jcm 6292 show a 64.7% ddh value, which is considered […]
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