GGDC specifications

Information


Unique identifier OMICS_17873
Name Genome-To-Genome Distance Calculator
Interface Web user interface
Restrictions to use None
Input format FASTA format
Computer skills Basic
Version 2.1
Stability Stable
Maintained Yes

Maintainer


  • person_outline Markus Goker <>

GGDC article

GGDC citations

 (3)
2018
PMCID: 5880901

[…] underlying genome blast distance phylogeny has been recognized to be a digital dna–dna hybridization (ddh) replacement (meier-kolthoff et al., 2013). in this study, an updated and enhanced platform genome-to-genome distance calculator (ggdc) v2.11 with improved ddh-prediction models and a set of novel features such as confidence-interval estimation was employed to calculate the intergenomic […]

2016
PMCID: 5031763

[…] perl scripts. protein homology was checked by blastp (camacho et al., 2009)., phylogenomic distances between genomes harboring the flagellar island and close relative genomes was calculated with the genome-to-genome distance calculator (ggdc) 2.1 web service http://ggdc.dsmz.de (meier-kolthoff et al., 2013). nucleotide sequence from each of the 45 orfs from the flagellar island were retrieved […]

2014
PMCID: 3907732

[…] (gbdp)-based dna-dna hybridization (ddh) prediction (6), the pair of b. pyogenes jcm 6294t and jcm 6292 genome sequences show a 100% ddh value calculated by the genome-to-genome distance calculator (ggdc) web server (ggdc 2.0 [http://ggdc.dsmz.de/distcalc2.php]). on the other hand, the pairs of jcm 10003 and b. pyogenes jcm 6294t or jcm 6292 show a 64.7% ddh value, which is considered […]

GGDC institution(s)
Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany; Eberhard-Karls-Universitat, Tubingen, Germany
GGDC funding source(s)
This work was supported by Zentrum fur Datenverarbeitung, University of Tubingen.

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