Genome Track Analyzer protocols

View Genome Track Analyzer computational protocol

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Genome Track Analyzer specifications

Information


Unique identifier OMICS_08287
Name Genome Track Analyzer
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Yuri V. Kravatsky <>

Publication for Genome Track Analyzer

Genome Track Analyzer in pipelines

 (2)
2018
PMCID: 5834206
PMID: 29462149
DOI: 10.1371/journal.pgen.1007216

[…] applying a multiple hypothesis corrected hypergeometric test using genes in the emap test library as background with a custom script., genome wide chip-seq correlations were performed using the genome track analyzer [] on uniformly processed tracks using segment midpoints and considering both strands. the h3k56ac and arp5 correlation reported in the text (r = 0.53) was calculated […]

2015
PMCID: 4583641
PMID: 26484232
DOI: 10.1016/j.gdata.2015.05.018

[…] with the options callpeak --gsize hs to set the correct genome size. peak summits obtained from macs2 were used for further analysis. the genometric analysis of both datasets was performed using genome track analyzer ., the raft procedure includes several steps in which very long dna molecules are manipulated in solution—from the elution of dna domains to the ligation of biotinylated […]


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Genome Track Analyzer in publication

PMCID: 4583641
PMID: 26484232
DOI: 10.1016/j.gdata.2015.05.018

[…] rearrangements (translocations, inversions, and deletions)., we studied the positional and ordering correlations between dsbs and h3k4me3 marks in the chromosomes of human hek293t cells using genome track analyzer . the h3k4me3 mark is a well-known promoter-specific histone modification that is associated with transcription and active genes. this epigenetic mark selectively directs global […]


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Genome Track Analyzer institution(s)
Engelhardt Institute of Molecular Biology of Russian Academy of Sciences, Moscow, Russia
Genome Track Analyzer funding source(s)
This work was supported by the Russian Fund of Basic Research (grant number 14-04-01638) and a grant from the Molecular and Cellular Biology Program of the Russian Academy of Sciences.

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