Genome Trax statistics

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Genome Trax specifications

Information


Unique identifier OMICS_02109
Name Genome Trax
Restrictions to use License purchase required
Content license Commercial
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Genome Trax citations

 (10)
library_books

Reanalysis of BRCA1/2 negative high risk ovarian cancer patients reveals novel germline risk loci and insights into missing heritability

2017
PLoS One
PMCID: 5462348
PMID: 28591191
DOI: 10.1371/journal.pone.0178450

[…] than 1/10 of all alignments for the given SNP2. SNP is represented by less than 5 reads 3. SNP quality is below 50 4. QD score (variant confidence) is below 1.5. Variant files were constructed using Genome Trax BIOBASE biological databases analysis software (http://www.biobase-international.com) and annotated with Illumina BaseSpace VariantStudio application v2.2.4. (www.illumina.com) and variant […]

library_books

Human population specific gene expression and transcriptional network modification with polymorphic transposable elements

2016
Nucleic Acids Res
PMCID: 5389732
PMID: 27998931
DOI: 10.1093/nar/gkw1286

[…] TF (PAX5) target genes were taken from annotations of experimentally characterized TF binding sites from the 2015.1 version of GENOME TRAX™ (www.biobase-international.com/genome-trax) from BIOBASE corporation (). TF-target gene interactions were visualized using the program Circos (version 0.69) (). […]

library_books

Copy number variation analysis detects novel candidate genes involved in follicular growth and oocyte maturation in a cohort of premature ovarian failure cases

2016
PMCID: 4974666
PMID: 27301361
DOI: 10.1093/humrep/dew142

[…] e capture target or with quality score <20 were filtered out. Variants were annotated using in-house developed scripts based on Ensembl API release 75, 1000 Genomes, dbSNP138, ExAC Browser, BIOBASE's Genome Trax™ database, and in-house whole-exome and whole-genome databases. […]

library_books

The genetic architecture of type 2 diabetes

2016
Nature
PMCID: 5034897
PMID: 27398621
DOI: 10.1038/nature18642

[…] ll variants reported as ‘high confidence’ and ‘disease-causing’ in the Human Gene Mutation Database (HGMD), annotated using Biobase ‘GenomeTrax’ software (http://www.biobase-international.com/product/genome-trax). We then analyzed each of the fifteen variant lists with the SKAT-O test, using the same meta-analysis procedure and covariates as in the exome-wide gene-based analysis. To obtain effect- […]

library_books

Establishing and validating regulatory regions for variant annotation and expression analysis

2016
BMC Genomics
PMCID: 4928138
PMID: 27357948
DOI: 10.1186/s12864-016-2724-0

[…] The datasets used in the analyses are parts of Transfac Professional and Genome Trax databases available at http://www.biobase-international.com/. […]

library_books

Crowdsourced direct to consumer genomic analysis of a family quartet

2015
BMC Genomics
PMCID: 4636840
PMID: 26547235
DOI: 10.1186/s12864-015-1973-7

[…] ariant level. A second Genetic Analysis filter was applied to exclude ‘homozygous’ and ‘heterozygous’ variants in controls and, with genotype occurrence in 2 of the 2 control samples at variant level.Genome Trax: Filtered non-HGMD common variants (>1 % allele frequency in dbSNP) []. Annotations were added from HGMD [], the GWAS Catalogue [] and ClinVar []. Allele frequencies for EVS and the 1000 G […]

Citations

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Genome Trax institution(s)
BIOBASE GmbH, Wolfenbuttel, Germany

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