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Genome visualization software tools | Annotation

Genome browsers are useful not only for showing final results but also for improving analysis protocols, testing data quality, and generating result drafts. Its integration in analysis pipelines allows the optimization of parameters, which leads to…
ZENBU
Web

ZENBU

Enables data exploration through "on-demand" data processing and…

Enables data exploration through "on-demand" data processing and interactive linked-visualizationsthus enabling concurrent views from the same mere primary sequence alignment data which…

IGV
Desktop

IGV Integrative Genomics Viewer

A high-performance viewer that efficiently handles large heterogeneous data…

A high-performance viewer that efficiently handles large heterogeneous data sets, while providing a smooth and intuitive user experience at all levels of genome resolution. A key characteristic of…

TnT
Desktop

TnT

A set of libraries aimed at creating powerful tree- and track-based…

A set of libraries aimed at creating powerful tree- and track-based visualisations for the web. Its modularity and rich API facilitate the development of many different visualisations ranging from…

GenPlay
Desktop

GenPlay

An analyzer and browser for high-throughput data. GenPlay recognizes a wide…

An analyzer and browser for high-throughput data. GenPlay recognizes a wide variety of common genomic data formats from microarray- or sequencing-based platforms and offers a library of operations…

UCSC Genome Browser
Web

UCSC Genome Browser University of California Santa Cruz Genome Browser

Offers online public access to a growing database of genomic sequence and…

Offers online public access to a growing database of genomic sequence and annotations for a large collection of organisms, primarily vertebrates, with an emphasis on the human and mouse genomes. The…

Trackster
Web

Trackster

A visual analysis environment for next-generation sequencing data that tightly…

A visual analysis environment for next-generation sequencing data that tightly couples interactive visualization with data analysis. Using Trackster, selected data subsets, rather than complete data…

IGB
Desktop

IGB Integrated Genome Browser

An easy-to-use, highly customizable genome browser you can use to view and…

An easy-to-use, highly customizable genome browser you can use to view and explore genomic data and annotations, especially RNA-Seq and ChIP-Seq data sets. IGB supports real-time zooming and panning…

UCSC Cancer…
Web

UCSC Cancer Genomics Browser

A web-based application that integrates relevant data, analysis and…

A web-based application that integrates relevant data, analysis and visualization, allowing users to easily discover and share their research observations. Users can explore the relationship between…

Genomicus
Web

Genomicus

A visualization tool allowing comparative genomics in four different phyla…

A visualization tool allowing comparative genomics in four different phyla (Vertebrate, Fungi, Metazoan and Plants). Genomicus provides access to genomic information from extant species, as well as…

JBrowse
Web
Desktop

JBrowse

A web-based genome browser, allowing many sources of data to be visualized,…

A web-based genome browser, allowing many sources of data to be visualized, interpreted and navigated in a coherent visual framework. JBrowse uses efficient data structures, pre-generation of image…

GBrowse
Web

GBrowse

A mature web-based genome browser that is suitable for deployment on both…

A mature web-based genome browser that is suitable for deployment on both public and private web sites. It supports most of genome browser features, including qualitative and quantitative (wiggle)…

JGI
Web

JGI Joint Genome Institute

Provides unified access to all Joint Genome Institute (JGI) genomic databases…

Provides unified access to all Joint Genome Institute (JGI) genomic databases and analytical tools. JGI allows the user to search, download and explore multiple data sets available for all Department…

Epiviz
Web
Desktop

Epiviz

An interactive visualization tool for functional genomics data. Epiviz supports…

An interactive visualization tool for functional genomics data. Epiviz supports genome navigation like other genome browsers, but allows multiple visualizations of data within genomic regions using…

Gff2ps
Desktop

Gff2ps

Permits to visualize annotations of genomic sequences. Gff2ps takes the…

Permits to visualize annotations of genomic sequences. Gff2ps takes the annotated features on a genomic sequence as input, and produces a visual output. It can plot the features in a variety of…

Gaggle
Desktop

Gaggle

Allows to integrate and visualize high throughput data in context of the…

Allows to integrate and visualize high throughput data in context of the genome. Gaggle is an interactive graphical tool which enables plotting of multiple tracks of data of diverse types along the…

GenomeView
Desktop

GenomeView

A next-generation stand-alone genome browser and editor initiated in the BSB…

A next-generation stand-alone genome browser and editor initiated in the BSB group at VIB and currently developed at Broad Institute.

Artemis
Desktop

Artemis

A free genome browser and annotation tool that allows visualisation of sequence…

A free genome browser and annotation tool that allows visualisation of sequence features, next generation data and the results of analyses within the context of the sequence, and also its six-frame…

Gviz
Desktop

Gviz

Offers a flexible framework to visualize genomic data in the context of a…

Offers a flexible framework to visualize genomic data in the context of a variety of different genome annotation features. Gviz is integrated with the existing infrastructure, but also provides…

G T A T C G C T A
MochiView
Desktop

MochiView

Java software that integrates browsing of genomic sequences, features, and data…

Java software that integrates browsing of genomic sequences, features, and data with DNA motif visualization and analysis.

G T A T C G C T A
ChAsE
Desktop

ChAsE Chromatin Analysis and Exploration

A cross-platform desktop application developed for interactive visualization,…

A cross-platform desktop application developed for interactive visualization, exploration and clustering of epigenomic data such as ChIP-seq experiments. ChAsE is designed and developed in close…

GenVisR
Desktop

GenVisR

Provides a user-friendly, flexible, and comprehensive suite of tools for…

Provides a user-friendly, flexible, and comprehensive suite of tools for visualizing complex genomic data in three categories (small variant, copy number alteration, and data quality). By leveraging…

Savant
Desktop

Savant

A next-generation genome browser designed for the latest generation of genome…

A next-generation genome browser designed for the latest generation of genome data.

D3GB
Desktop

D3GB

Browses genome through an interactive interface. D3GB can be easily integrated…

Browses genome through an interactive interface. D3GB can be easily integrated in analysis protocols and shared on the Web. It is distributed as an R package, a Python module, and a WordPress plugin…

Map Viewer
Web

Map Viewer

Provides special browsing capabilities for a subset of organisms in Entrez…

Provides special browsing capabilities for a subset of organisms in Entrez Genomes. Map Viewer allows you to view and search an organism's complete genome, display chromosome maps, and zoom into…

PBrowse
Web
Desktop

PBrowse

Provides both an integrated, real-time collaborative platform and a…

Provides both an integrated, real-time collaborative platform and a comprehensive file sharing system. PBrowse allows real-time track comment and has integrated group chat to facilitate interactive…

karyoploteR
Desktop

karyoploteR

Creates karyotype plots of arbitrary genomes and offers a complete set of…

Creates karyotype plots of arbitrary genomes and offers a complete set of functions to plot arbitrary data on them. karyoploteR mimics many R base graphics functions coupling them with a coordinate…

VG
Desktop

VG variation graph

Provides a succinct encoding of the sequences of many genomes. A variation…

Provides a succinct encoding of the sequences of many genomes. A variation graph (in particular as implemented in variation graph (VG)) is composed of (i) nodes, which are labelled by sequences and…

kmerPyramid
Desktop

kmerPyramid

Allows user to compare the frequency of his sequences with frequencies of…

Allows user to compare the frequency of his sequences with frequencies of thousands of viral and bacterial reference sequences. The kmerPyramid package is a useful method for visualizing and…

Dynamix
Desktop

Dynamix

Enables the parallel inspection of hundreds of genomic data sets. Dynamix…

Enables the parallel inspection of hundreds of genomic data sets. Dynamix automatically displays data tracks with signal within a genomic region of interest. This JBrowse plugin also introduces a new…

gtrellis
Desktop

gtrellis

Provides an easy and effective way to visualize genomic data in a Trellis…

Provides an easy and effective way to visualize genomic data in a Trellis layout and reveal high dimensional relationships on a genome-wide scale. gtrellis can be flexibly extended and thus can also…

DensityMap
Web

DensityMap

A lightweight Perl program that can display the distribution and densities of…

A lightweight Perl program that can display the distribution and densities of several features (genes, ncRNA, cpg, etc.) along chromosomes on the scale of the whole genome. DensityMap uses GFF…

caOmicsV
Desktop

caOmicsV

Provides methods under R environment to visualize multidimensional cancer…

Provides methods under R environment to visualize multidimensional cancer genomic data in two layouts: matrix layout and combined biological network and circular layout. Both layouts support to…

ggbio
Desktop

ggbio

A package based on a new methodology to visualize and explore genomics…

A package based on a new methodology to visualize and explore genomics annotations and high-throughput data. ggbio’s plots provide detailed views of genomic regions, summary views of sequence…

visPIG
Web
Desktop

visPIG VISual Plotting Interface for Genetics

Permits to produce figures containing multiple (epi-) genetic data tracks.…

Permits to produce figures containing multiple (epi-) genetic data tracks. visPIG can display multiple data tracks across multiple regions at multiple scales. It provides options to plot multiple…

WiggleTools
Desktop

WiggleTools

A multithreaded library that computes statistics on large numbers of datasets,…

A multithreaded library that computes statistics on large numbers of datasets, generating statistical summaries within minutes with limited memory requirements, whether on the whole genome or on…

DiProGB
Desktop

DiProGB Dinucleotide Properties Genome Browser

An easy to use new genome browser that encodes the primary nucleotide sequence…

An easy to use new genome browser that encodes the primary nucleotide sequence by thermodynamical and geometrical dinucleotide properties. The nucleotide sequence is thus converted into a sequence…

RGV
Web

RGV ReproGenomics Viewer

A cross-species genomic toolbox for the reproductive community. The system is…

A cross-species genomic toolbox for the reproductive community. The system is based on the implementation of a JBrowse genome browser and a Galaxy bioinformatics workflow environment. It was…

GBshape
Dataset

GBshape Genome Browser for DNA shape annotations

Provides DNA shape annotations of entire genomes. The database currently…

Provides DNA shape annotations of entire genomes. The database currently contains annotations for minor groove width (MGW), propeller twist (ProT), Roll, helix twist (HelT), and hydroxyl radical…

myGenomeBrowser
Web

myGenomeBrowser

Provides biologists with a way to build, query and share their genome browsers.…

Provides biologists with a way to build, query and share their genome browsers. myGenomeBrowser is a web-based designed to give users more autonomy while simplifying and minimizing intervention from…

pileup.js
Desktop

pileup.js

A browser-based genome viewer. pileup.js is designed to facilitate the…

A browser-based genome viewer. pileup.js is designed to facilitate the investigation of evidence for genomic variants within larger web applications. It takes advantage of recent developments in the…

GTB
Web

GTB Genome Tolerance Browser

Enables users to visualize the similarities and differences between several…

Enables users to visualize the similarities and differences between several prediction algorithms. GTB is an online genome browser for visualizing the predicted tolerance of the human genome. It…

Genome…
Web

Genome Projector

An intuitive Web application for browsing genomics information, implemented…

An intuitive Web application for browsing genomics information, implemented with a zoomable user interface and tabbed browsing utilising Google Maps API and Asynchronous JavaScript and XML (AJAX)…

PGB
Web

PGB Personal Genome Browser

Provides comprehensive functional annotation and visualization for individual…

Provides comprehensive functional annotation and visualization for individual genomes based on the genetic-molecular-phenotypic model. Investigators can easily view individual genetic variants, such…

GIVe
Web

GIVe Genomic Interaction Visualizer

Enables to build custom genome browsers. GIVe is a programming library allowing…

Enables to build custom genome browsers. GIVe is a programming library allowing creation of platforms for releasing datasets produced by national and international consortiums. With a bit of…

C-State
Web
Desktop

C-State Chromatin-State

Provides a pipeline to load user-generated genome-wide peak information files.…

Provides a pipeline to load user-generated genome-wide peak information files. C-State is a single-page application for comparative epigenomic analysis. It offers simple graphical user interface…

PopFly
Web

PopFly

Contains a complete inventory of population genomic parameters estimated from…

Contains a complete inventory of population genomic parameters estimated from the Drosophila Genome Nexus (DGN) project data. PopFly is a population genomics-oriented web-browser that updates…

ASCIIGenome
Desktop

ASCIIGenome

Browses and displays genomic data directly in a terminal window. ASCIIGenome…

Browses and displays genomic data directly in a terminal window. ASCIIGenome aims to be easily integrated with the command line, including batch processing of data, and therefore enables an effective…

Chromozoom
Web

Chromozoom

An interactive genome browser on the web for both curated and custom data, with…

An interactive genome browser on the web for both curated and custom data, with a focus on ease of use and flexibility. Chromozoom enables rapid and simultaneous exploration of curated, experimental…

chromPlot
Desktop

chromPlot

A tool for displaying large and diverse genomic data in idiograms of one or…

A tool for displaying large and diverse genomic data in idiograms of one or multiple chromosomes. chromPlot is implemented in R so that visualization can be easily integrated with its numerous…

rtracklayer
Desktop

rtracklayer

Supports the integration of existing genome browsers with experimental data…

Supports the integration of existing genome browsers with experimental data analyses performed in R. The user may (i) transfer annotation tracks to and from a genome browser and (ii) create and…

UK10K Genome…
Web

UK10K Genome Browser

Exploits the key basic features of the Biodalliance Genome Browser. UK10K…

Exploits the key basic features of the Biodalliance Genome Browser. UK10K Genome Browser provides an intuitive and efficient platform to access association statistics for common, low frequency and…

PopGeV
Web

PopGeV

The rapid growth of the amount of sequencing data produced by genomic studies…

The rapid growth of the amount of sequencing data produced by genomic studies has raised challenges for data analysis and visualization techniques. PopGeV has the following characteristics. First, it…

FGB
Web

FGB Family genome browser

Provides comprehensive analysis and visualization for family genomes. The FGB…

Provides comprehensive analysis and visualization for family genomes. The FGB can visualize family genomes in both individual level and variant level effectively, through integrating genome data with…

UTGB
Desktop

UTGB University of Tokyo Genome Browser

An open-source software for developing personalized genome browsers that work…

An open-source software for developing personalized genome browsers that work in web browsers.

Apollo
Desktop

Apollo

A browser-based genome editor that supports geographically dispersed…

A browser-based genome editor that supports geographically dispersed researchers whose work is coordinated through automatic synchronization. The overall platform is currently comprised of a…

GenomeGraphs
Desktop

GenomeGraphs

Facilitates analysis and visualization of mRNA-Seq data. GenomeGraphs is a…

Facilitates analysis and visualization of mRNA-Seq data. GenomeGraphs is a visualization tool that allows complex customization to facilitate a more complete integration and representation of genomic…

Genome-tools
Desktop

Genome-tools

Facilitates access to genome sequence information. Genome-tools is a Perl…

Facilitates access to genome sequence information. Genome-tools is a Perl module, a set of programs, and a user interface designed to be accessible and useful to both nonprogrammers and programmers.…

ABrowse
Desktop

ABrowse

A general-purpose genome browser framework ABrowse which provides interactive…

A general-purpose genome browser framework ABrowse which provides interactive browsing experience, open data access and collaborative work support. By supporting Google-map-like smooth navigation,…

G T A T C G C T A
ColoWeb
Web

ColoWeb

A web-based service for evaluating the colocation of genomic features. Users…

A web-based service for evaluating the colocation of genomic features. Users submit genomic regions of interest, for example, a set of locations from a ChIP-seq analysis. ColoWeb compares the…

VisualTE
Desktop

VisualTE

A JAVA stand-alone graphical interface that allows users to visualize and…

A JAVA stand-alone graphical interface that allows users to visualize and analyze all occurrences of transposable element families in annotated genomes. VisualTE reads and extracts transposable…

HuRef Genome…
Web

HuRef Genome Browser

A web application for the navigation and analysis of the previously published…

A web application for the navigation and analysis of the previously published genome of a human individual, termed HuRef. The graphical interface depicts the haploid sequence with SNP and…

Genome Maps
Web

Genome Maps

Allows to browse several genomes and annotations by fetching data from CellBase…

Allows to browse several genomes and annotations by fetching data from CellBase REST web services. Genome Maps is a genome browser that implements a model of data transfer and management. The…

PoGo
Desktop

PoGo

Uses transcript translations and reference gene annotations to identify the…

Uses transcript translations and reference gene annotations to identify the genomic loci of peptides and post-translational modifications. PoGo is a tool for mapping peptides identified through mass…

Circleator
Desktop

Circleator

A Perl application that generates circular figures of genome-associated data.

A Perl application that generates circular figures of genome-associated data.

Rgb
Desktop

Rgb R genome browser

Dedicated to memory efficient genome browsing strategies (both in scripts and…

Dedicated to memory efficient genome browsing strategies (both in scripts and interactive sessions) using the R scripting language.

GeneDig
Web

GeneDig

A web-based application that allows any general user access to genomic…

A web-based application that allows any general user access to genomic information with ease and efficiency. GeneDig allows for searching and browsing genes and genomes, while a dynamic navigator…

GEB
Desktop

GEB Genome Environment Browser

A Java application developed to visualise distribution of genomic features in…

A Java application developed to visualise distribution of genomic features in high resolution.

PhenoGram
Web
Desktop

PhenoGram

A flexible software tool that allows researchers to create chomosomal ideograms…

A flexible software tool that allows researchers to create chomosomal ideograms annotated with lines in color at specific base-pair locations, or colored base-pair to base-pair regions, with or…

UCSC Xena
Web
Desktop

UCSC Xena

Securely analyzes and visualizes private functional genomics data set in the…

Securely analyzes and visualizes private functional genomics data set in the context of public and shared genomic/phenotypic data sets. UCSC Xena is a Functional Genomics Browser with analytics,…

IdeoViz
Desktop

IdeoViz

Provides a method to plot one or several data series against the chromosomal…

Provides a method to plot one or several data series against the chromosomal ideogram. IdeoViz is an R Bioconductor package that permits to use some simple options (vertical/horizontal orientation,…

tracktables
Desktop

tracktables

Creates complex integrative genomics viewer (IGV) genome browser sessions and…

Creates complex integrative genomics viewer (IGV) genome browser sessions and dynamic IGV reports in HTML pages. Tracktables offers functions that uses igvParam(object) to create a parameter object…

GenePlotter
Desktop

GenePlotter

Offers basic functions for plotting genetic data. Geneplotter is a package that…

Offers basic functions for plotting genetic data. Geneplotter is a package that offers a function for plotting expression data from an ExpressionSet for a given chromosome, a function to create an…

Idiogram
Desktop

Idiogram

Draws schematic representations of human, mouse, and rat chromosomes and not…

Draws schematic representations of human, mouse, and rat chromosomes and not Mayan or Egyptian hieroglyphs (ideograms) as earlier implied. Idiogram is a package for plotting genomic data by…

VOCS
Desktop

VOCS Viral Orthologous Clusters

Searches and extracts genome, gene and protein data from the Viral…

Searches and extracts genome, gene and protein data from the Viral Bioinformatics Resource Center (VBRC) database. VOCS includes Asfarviridae, Baculoviridae, Iridoviridae, and Poxviridae. It compares…

BioJS-HGV…
Desktop

BioJS-HGV Viewer

A BioJS component to represent and visualize genetic variants pooled from…

A BioJS component to represent and visualize genetic variants pooled from different sources. BioJS-HGV Viewer displays sequences and variants at different levels of detail, facilitating…

Argo Genome…
Desktop

Argo Genome Browser

Allows visualization and manual annotation of whole genomes. Argo Genome…

Allows visualization and manual annotation of whole genomes. Argo Genome Browser is a standalone application which provides display of sequence and annotation tracks, extensive customization options,…

Scribl
Desktop

Scribl

A flexible genomic visualization library specifically targeting…

A flexible genomic visualization library specifically targeting coordinate-based data such as genomic features, DNA sequence and genetic variants. Scribl simplifies the development of sophisticated…

Dalliance
Web

Dalliance

A fast, interactive, genome visualization tool that's easy to embed in web…

A fast, interactive, genome visualization tool that's easy to embed in web pages and applications. Dalliance supports integration of data from a wide variety of sources, and can load data…

TASUKE
Desktop
Web

TASUKE

A web application that visualizes large-scale resequencing data generated by…

A web application that visualizes large-scale resequencing data generated by next-generation sequencing technologies and is suitable for rapid data release to the public on the web. The variation and…

MGcV
Web

MGcV Microbial Genomic context Viewer

An user-friendly visualisation tool to create circular genome maps in a…

An user-friendly visualisation tool to create circular genome maps in a stepwise fashion. All complete microbial RefSeq genomes are available.

GenExp
Web

GenExp

A web based and fully interactive visual distributed annotation system (DAS)…

A web based and fully interactive visual distributed annotation system (DAS) client. GenExp is a genome oriented DAS client capable of creating informative representations of genomic data zooming out…

PlasmaDNA
Desktop

PlasmaDNA

A program available both on Windows and Apple operating systems, designed to…

A program available both on Windows and Apple operating systems, designed to facilitate molecular cloning experiments by building a visual map of the DNA. It then allows the complete planning and…

Genoviz SDK
Desktop

Genoviz SDK Genoviz Software Development Kit

Provides a mechanism for incorporating adaptive, dynamic zooming into…

Provides a mechanism for incorporating adaptive, dynamic zooming into applications, a desirable feature of genome viewers. The Genoviz Software Development Kit (SDK) is an open source, Java-based…

GeneViTo
Desktop

GeneViTo

Serves as a workbench for genome wide analysis through visual interaction.…

Serves as a workbench for genome wide analysis through visual interaction. GeneViTo is a JAVA-based computer application that deals with various experimental information concerning both DNA and…

GraphDNA
Desktop

GraphDNA DNA Skew Graphing

Displays and compares DNA sequences graphically using three available…

Displays and compares DNA sequences graphically using three available methods–DNA walks, cumulative purine/keto skews and cumulative dinucleotide skews. GraphDNA offers a quick and easy method to…

VisualRepbase
Desktop

VisualRepbase

Allows for displaying and analyzing all occurrences of transposable element…

Allows for displaying and analyzing all occurrences of transposable element families present in an annotated genome. VisualRepbase is a Java-based interface which can download selected occurrences of…

GeneSpy
Desktop

GeneSpy

GeneSpy is a genomic context explorer. It can load data and generate nice…

GeneSpy is a genomic context explorer. It can load data and generate nice figures of genomic context thank to many options and ways. In addition, GeneSpy can use custom local database to visualize…

Regulome…
Web

Regulome Explorer

Enables users to search, filter, and visualize analytical results generated…

Enables users to search, filter, and visualize analytical results generated from the Cancer Genome Atlas (CGA) data. Regulome Explorer is a visualization resource that permits to illustrate example…

banana
Desktop

banana

Plots bending and curvature data for B-DNA. banana predicts bending of a normal…

Plots bending and curvature data for B-DNA. banana predicts bending of a normal B-DNA double helix. The program calculates the magnitude of local bending and macroscopic curvature at each point along…

GUPPY
Desktop

GUPPY

Visualizes sequence annotation data of the genetic sequence data with graphical…

Visualizes sequence annotation data of the genetic sequence data with graphical layout. GUPPY allows smooth scrolling and zooming from the genomic landscape to discrete nucleic acid sequences. Its…

Blobsplorer
Desktop

Blobsplorer

Aids exploration and selection of subsets from Taxon-Annotated-GC-Coverage…

Aids exploration and selection of subsets from Taxon-Annotated-GC-Coverage (TAGC) annotated data. Blobsplorer is a tool for interactive visualization of assembled DNA sequence data…

CViT
Desktop

CViT Chromosome Visualization Tool

A collection of Perl scripts that enable quick visualizations of features on…

A collection of Perl scripts that enable quick visualizations of features on linkage groups, pseudochromosomes or cytogenetic maps. CViT is intended for whole-genome views of data but can be used to…

Genome Browser
Desktop

Genome Browser

Allows companies, core labs, and individuals to visualize their genomic data…

Allows companies, core labs, and individuals to visualize their genomic data like never before. Integrated fully with Omicsoft's Array Suite package (Array Server, Array Viewer and Array…

bedBamAndBeyond
Desktop

bedBamAndBeyond

A lightweight tool to visualize genomic ranges from a BED/BAM file. You can…

A lightweight tool to visualize genomic ranges from a BED/BAM file. You can just type: bedBamAndBeyond out.pdf in.bam

GREMLIN
Desktop

GREMLIN Genome Rearrangement Explorer with Multi-scale,Linked INteractions

An interactive visualization model for comparative analysis of structural…

An interactive visualization model for comparative analysis of structural variants and rearrangements in human and cancer genomes, with emphasis on data integration and uncertainty visualization. To…

Pairoscope
Desktop

Pairoscope

Generates simple static plots of read pairing information. It is useful for…

Generates simple static plots of read pairing information. It is useful for viewing putative SV calls from callers that utilize insert size metrics and read pair orientation.

Ideogram Viewer
Web

Ideogram Viewer

An interactive tool for viewing the location and annotation of genes on human…

An interactive tool for viewing the location and annotation of genes on human chromosomes.

FriPan
Web

FriPan

A web-based tool for exploring the pan-genome of multiple bacterial genomes.

A web-based tool for exploring the pan-genome of multiple bacterial genomes.

GenomeJack
Desktop

GenomeJack

A genome browser specialized in next-generation sequencing data. GenomeJack…

A genome browser specialized in next-generation sequencing data. GenomeJack Browser features ultra-smooth GUI response even with big amounts of NGS data. So many convenient functions, such as…

DNASTAR…
Desktop

DNASTAR GenVision

A genomic visualization application that is designed to support easy generation…

A genomic visualization application that is designed to support easy generation of publication quality graphics and maps.

NCBI Genome…
Desktop

NCBI Genome Workbench

Allows to view and analyze sequence data. NCBI Genome Workbench is an…

Allows to view and analyze sequence data. NCBI Genome Workbench is an integrated application allowing to display sequence data in graphical, alignment, phylogenetic tree and tabular views. Data can…

SeqGenome…
Desktop

SeqGenome Browser

A mini cross-platform local genome browser, was designed for visualizing…

A mini cross-platform local genome browser, was designed for visualizing next-generation sequencing data.

Anno-J
Web

Anno-J

A web application designed for visualizing deep sequencing data and other…

A web application designed for visualizing deep sequencing data and other genome annotation data. Anno-J is intended to run in modern W3C compliant browsers, and allows flexible configuration of…

Celera Genome…
Desktop

Celera Genome Browser

Developed at Celera Genomics as part of Celera's sequencing and annotation…

Developed at Celera Genomics as part of Celera's sequencing and annotation of the human genome, and released as open source in 2006.

MI Bundle
Desktop

MI Bundle

An extension for the Integrated Genome Browser, a widely used tool for the…

An extension for the Integrated Genome Browser, a widely used tool for the visualization and analyzes of genomic data, which maps and visualizes genomic regions in molecular interaction structures…

MetaLook
Desktop

MetaLook

Offers a three-dimensional user interface to interactively visualise DNA…

Offers a three-dimensional user interface to interactively visualise DNA sequences on a world map, based on a centralised georeferenced database. MetaLook is a software for visualisation and analysis…

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