genipe specifications

Unique identifier:
OMICS_12568
Software type:
Pipeline/Workflow
Restrictions to use:
None
Output data:
The genipe pipeline generates output files for each of the autosomal chromosomes (from 1 to 22).
Programming languages:
Python
Stability:
Stable
Maintained:
Yes
Name:
GENome-wide Imputation PipelinE
Interface:
Command line interface
Input data:
Multiple input files are required for genipe, including the initial genotypes and the reference files (for imputation).
Operating system:
Unix/Linux
Computer skills:
Advanced
Requirements:
Numpy, Jinja2, pandas, setuptools, Plink, shapeit, impute2

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genipe support

Documentation

Maintainer

  • Louis-Philippe Lemieux Perreault <>

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Publications

Institution(s)

Beaulieu-Saucier Université de Montréal Pharmacogenomics Centre, Montreal Heart Institute Research Center, Montréal, Canada; Université de Montréal, Faculty of Medicine, Montréal, Canada

Funding source(s)

This work was supported by the Montreal Heart Institute Foundation, Genome Canada and Genome Quebec.

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