- Unique identifier:
- Software type:
- Restrictions to use:
- Input format:
- Output format:
- SSR, STS, GFF, GBF
- Programming languages:
- Java, Perl, R
- Genome-wide Microsatellite Analyzing Tool Package
- Command line interface, Graphical user interface
- Input data:
- DNA sequences
- Output data:
- SSR starting position, ending position, repetitions, and motif
- Operating system:
- Unix/Linux, Mac OS, Windows
- Computer skills:
- Documentation: https://sourceforge.net/p/gmata/wiki/Home/
- Xuewen Wang <>
I am trying to run the program for one of my fasta files. I have downloaded the GMATA.jar file and made it executable. While trying to run in SSR identification mode, after giving all the inputs the console says this
-r 5 -m 1 -x 6 -s 0 -i /home/akshay/bin/gmata/test_input.fa
Unable to excute SHELL command """
(Wang and Wang, 2016)
GMATA: An Integrated Software Package for Genome-Scale SSR Mining, Marker Development and Viewing.
Front Plant Sci.
PMID: 27679641 DOI: 10.3389/fpls.2016.01350
Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China; Key Laboratory of Forensic Genetics and Beijing Engineering Research Center of Crime Scene Evidence Examination, Institute of Forensic Science, Ministry of Public Security, Beijing, China
1 user review
1 user review
Great news. I am glad to find that the software GMATA is on Omicstool now. I just notice this page.
Hope this will contribute to the research and application in the field of DNA sequence to molecular markers. This is a better software than existing tools.
I will be glad to answer any question from you here.