Main logo
tutorial arrow
Create your own tool library
Bookmark tools and put favorites into folders to find them easily.

Genome-wide Microsatellite Analyzing Tool Package GMATA


Provides new strategies and complete solutions for fast simple sequence repeats (SSR) analyses, marker development, polymorphism screening by mapping and graphical display of results in a genome browser with other genic features. GMATA is the first tool that generates results that enable viewing SSR loci and SSR marker information along with other genome features in a genome browser. GMATA is also the first software package to generate multiple statistical graphics for SSRs, and the high-quality statistical graphics can be directly incorporated into articles for publication.

User report

tutorial arrow
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community
Sort by:

1 user review

1 user review

Xuewen Wang's avatar image Xuewen Wang's country flag

Xuewen Wang

Great news. I am glad to find that the software GMATA is on Omicstool now. I just notice this page.
Hope this will contribute to the research and application in the field of DNA sequence to molecular markers. This is a better software than existing tools.
I will be glad to answer any question from you here.
Xuewen Wang

GMATA forum

tutorial arrow
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

GMATA classification

GMATA specifications

Software type:
Restrictions to use:
Input format:
Output format:
Programming languages:
Java, Perl, R
Command line interface, Graphical user interface
Input data:
DNA sequences
Output data:
SSR starting position, ending position, repetitions, and motif
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:

GMATA distribution


tutorial arrow
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.


GMATA support



  • Xuewen Wang <>


tutorial arrow
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship



Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China; Key Laboratory of Forensic Genetics and Beijing Engineering Research Center of Crime Scene Evidence Examination, Institute of Forensic Science, Ministry of Public Security, Beijing, China

Link to literature

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.