|Name||Genome-wide Microsatellite Analyzing Tool Package|
|Interface||Command line interface, Graphical user interface|
|Restrictions to use||None|
|Input data||DNA sequences|
|Output data||SSR starting position, ending position, repetitions, and motif|
|Output format||SSR, STS, GFF, GBF|
|Operating system||Unix/Linux, Mac OS, Windows|
|Programming languages||Java, Perl, R|
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- Documentation: https://sourceforge.net/p/gmata/wiki/Home/
- person_outline Xuewen Wang <>
SHELL error while trying to execute
#1 opened on 2017-07-12 by Akshay Avvaru • 2 answers
Hi, I am trying to run the program for one of my fasta files. I have downloaded the GMATA.jar file and made it executable. While trying to run in SSR identification mode, after giving all the inputs the console says this """ Running statement: -r 5 -m 1 -x 6 -s 0 -i /home/akshay/bin/gmata/test_input.fa File path: /home/akshay Unable to excute SHELL command """
I have the same problem. Is there any answer?
You installation has issue. Please follow the installation details in file GMATA_installation.pdf to install GMATA at link https://sourceforge.net/projects/gmata/files/?source=navbar
Hope this will contribute to the research and application in the field of DNA sequence to molecular markers. This is a better software than existing tools.
I will be glad to answer any question from you here.