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Genome-wide Microsatellite Analyzing Tool Package GMATA

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Provides new strategies and complete solutions for fast simple sequence repeats (SSR) analyses, marker development, polymorphism screening by mapping and graphical display of results in a genome browser with other genic features. GMATA is the first tool that generates results that enable viewing SSR loci and SSR marker information along with other genome features in a genome browser. GMATA is also the first software package to generate multiple statistical graphics for SSRs, and the high-quality statistical graphics can be directly incorporated into articles for publication.

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1 user review

1 user review

Xuewen Wang's avatar image Xuewen Wang's country flag

Xuewen Wang

Great news. I am glad to find that the software GMATA is on Omicstool now. I just notice this page.
Hope this will contribute to the research and application in the field of DNA sequence to molecular markers. This is a better software than existing tools.
I will be glad to answer any question from you here.
Xuewen Wang

GMATA forum

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GMATA versioning

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No versioning.

GMATA classification

GMATA specifications

Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTA
Output format:
SSR, STS, GFF, GBF
Programming languages:
Java, Perl, R
Version:
2.1
Interface:
Command line interface, Graphical user interface
Input data:
DNA sequences
Output data:
SSR starting position, ending position, repetitions, and motif
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

GMATA support

Documentation

Maintainer

  • Xuewen Wang <>

Credits

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Publications

Institution(s)

Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China; Key Laboratory of Forensic Genetics and Beijing Engineering Research Center of Crime Scene Evidence Examination, Institute of Forensic Science, Ministry of Public Security, Beijing, China

Link to literature

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