GMATA specifications

Unique identifier:
OMICS_14716
Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTA
Output format:
SSR, STS, GFF, GBF
Programming languages:
Java, Perl, R
Version:
2.1
Maintained:
Yes
Name:
Genome-wide Microsatellite Analyzing Tool Package
Interface:
Command line interface, Graphical user interface
Input data:
DNA sequences
Output data:
SSR starting position, ending position, repetitions, and motif
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Stability:
Stable

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

GMATA distribution

download

GMATA support

Documentation

Maintainer

  • Xuewen Wang <>

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China; Key Laboratory of Forensic Genetics and Beijing Engineering Research Center of Crime Scene Evidence Examination, Institute of Forensic Science, Ministry of Public Security, Beijing, China

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community
Sort by:

1 user review

star_border star_border star_border star_border star_border
star star star star star

1 user review

star_border star_border star_border star_border star_border
star star star star star
Xuewen Wang's avatar image Xuewen Wang's country flag

Xuewen Wang

star_border star_border star_border star_border star_border
star star star star star

Great news. I am glad to find that the software GMATA is on Omicstool now. I just notice this page.
Hope this will contribute to the research and application in the field of DNA sequence to molecular markers. This is a better software than existing tools.
I will be glad to answer any question from you here.
Xuewen Wang