Genome2Seq protocols
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Genome2Seq specifications
Information
| Unique identifier | OMICS_22588 |
|---|---|
| Name | Genome2Seq |
| Interface | Web user interface |
| Restrictions to use | None |
| Input data | A unique ID, chromosome number, start location, and stop location in that order. |
| Input format | TXT |
| Output format | FASTA |
| Computer skills | Basic |
| Stability | Stable |
| Maintained | Yes |
Maintainer
- person_outline AgBase Team <>
Additional information
Genome2Seq in pipeline
[…] the mean number of total mapped reads estimated by tophat [] was 17 m, for an average of 65.38% paired reads mapped. all transcripts were annotated using the ensembl perl api or agbase tools [], genome2seq and goanna. a total of 16,101 genes were analyzed after filtering out lowly expressed genes. correlations among mean gene expression levels between both the h and l groups was high (r = […]
Genome2Seq in publication
[…] the mean number of total mapped reads estimated by tophat [] was 17 m, for an average of 65.38% paired reads mapped. all transcripts were annotated using the ensembl perl api or agbase tools [], genome2seq and goanna. a total of 16,101 genes were analyzed after filtering out lowly expressed genes. correlations among mean gene expression levels between both the h and l groups was high (r = […]
Genome2Seq reviews
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