Genome2Seq specifications

Information


Unique identifier OMICS_22588
Name Genome2Seq
Interface Web user interface
Restrictions to use None
Input data A unique ID, chromosome number, start location, and stop location in that order.
Input format TXT
Output format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline AgBase Team

Additional information


http://www.agbase.msstate.edu/help/genome2seq_help.html

Genome2Seq citation

library_books

Putative Regulatory Factors Associated with Intramuscular Fat Content

2015
PLoS One
PMCID: 4456163
PMID: 26042666
DOI: 10.1371/journal.pone.0128350

[…] ts). The mean number of total mapped reads estimated by Tophat [] was 17 M, for an average of 65.38% paired reads mapped. All transcripts were annotated using the Ensembl Perl API or AgBase tools [], genome2seq and GOanna. A total of 16,101 genes were analyzed after filtering out lowly expressed genes. Correlations among mean gene expression levels between both the H and L groups was high (r = 0.9 […]

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