Genome2Seq protocols

View Genome2Seq computational protocol

Genome2Seq statistics

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Tool usage distribution map

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Associated diseases

Associated diseases

Genome2Seq specifications

Information


Unique identifier OMICS_22588
Name Genome2Seq
Interface Web user interface
Restrictions to use None
Input data A unique ID, chromosome number, start location, and stop location in that order.
Input format TXT
Output format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline AgBase Team <>

Additional information


http://www.agbase.msstate.edu/help/genome2seq_help.html

Genome2Seq in pipeline

2015
PMCID: 4456163
PMID: 26042666
DOI: 10.1371/journal.pone.0128350

[…] the mean number of total mapped reads estimated by tophat [] was 17 m, for an average of 65.38% paired reads mapped. all transcripts were annotated using the ensembl perl api or agbase tools [], genome2seq and goanna. a total of 16,101 genes were analyzed after filtering out lowly expressed genes. correlations among mean gene expression levels between both the h and l groups was high (r = […]


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Genome2Seq in publication

PMCID: 4456163
PMID: 26042666
DOI: 10.1371/journal.pone.0128350

[…] the mean number of total mapped reads estimated by tophat [] was 17 m, for an average of 65.38% paired reads mapped. all transcripts were annotated using the ensembl perl api or agbase tools [], genome2seq and goanna. a total of 16,101 genes were analyzed after filtering out lowly expressed genes. correlations among mean gene expression levels between both the h and l groups was high (r = […]


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