Genome2Seq specifications
Information
| Unique identifier | OMICS_22588 |
|---|---|
| Name | Genome2Seq |
| Interface | Web user interface |
| Restrictions to use | None |
| Input data | A unique ID, chromosome number, start location, and stop location in that order. |
| Input format | TXT |
| Output format | FASTA |
| Computer skills | Basic |
| Stability | Stable |
| Maintained | Yes |
Maintainer
- person_outline AgBase Team
Additional information
http://www.agbase.msstate.edu/help/genome2seq_help.html
Genome2Seq citation
library_books
Putative Regulatory Factors Associated with Intramuscular Fat Content
2015
PLoS One
PMCID: 4456163
PMID: 26042666
DOI: 10.1371/journal.pone.0128350
[…] ts). The mean number of total mapped reads estimated by Tophat [] was 17 M, for an average of 65.38% paired reads mapped. All transcripts were annotated using the Ensembl Perl API or AgBase tools [], genome2seq and GOanna. A total of 16,101 genes were analyzed after filtering out lowly expressed genes. Correlations among mean gene expression levels between both the H and L groups was high (r = 0.9 […]
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