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GenomeBlast specifications


Unique identifier OMICS_20474
Name GenomeBlast
Restrictions to use None
Computer skills Basic
Stability No
Maintained No


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Publication for GenomeBlast

GenomeBlast citations


Characterization of long chain acyl CoA synthetases which stimulate secretion of fatty acids in green algae Chlamydomonas reinhardtii

Biotechnol Biofuels
PMCID: 5007677
PMID: 27588037
DOI: 10.1186/s13068-016-0598-7

[…] To clone potential LACSs cDNAs in C. reinhardtii, genomeblast was adopted using LACSs genes from related species. Finally, two hypothetical genes were found. Using primers in Additional file : Table S1 and RT-PCR, the cDNAs were successfully cloned, […]


CoreGenes3.5: a webserver for the determination of core genes from sets of viral and small bacterial genomes

BMC Res Notes
PMCID: 3630060
PMID: 23566564
DOI: 10.1186/1756-0500-6-140

[…] LAST-based algorithms to identify core genes. Of these, mGenomeSubtractor is primarily intended for use with bacterial genomes, whilst CEGMA is intended primarily for eukaryotic genomes; nWayComp and GenomeBlast are no longer accessible online, as is another genome comparison tool called GOAT []. In contrast, CoreGenes has been continuously available online since 2002, and shown to be invaluable i […]


Development of computations in bioscience and bioinformatics and its application: review of the Symposium of Computations in Bioinformatics and Bioscience (SCBB06)

BMC Bioinformatics
PMCID: 1780134
PMID: 17217501
DOI: 10.1186/1471-2105-7-S4-S1

[…] Lu et al [] developed a user friendly web tool, GenomeBlast to compare small genomes. This tool can be used to identify homologous and unique genes among compared genomes, as well as to view genome distribution graphically and construct genome phyl […]


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GenomeBlast institution(s)
Department of Biology, University of Nebraska at Omaha, Omaha, NE, USA; Department of Computer Science, University of Nebraska-Lincoln, Lincoln, NE, USA; Department of Computer Science, University of Nebraska at Omaha, Omaha, NE, USA; School of Biological Sciences, University of Nebraska-Lincoln, Lincoln, NE, USA; Nebraska Center for Virology, University of Nebraska-Lincoln, Lincoln, NE, USA; Virginia Bioinformatics Institute, Virginia Tech Blacksburg, VA, USA; Plant Science Initiative, University of Nebraska-Lincoln, Lincoln, NE, USA
GenomeBlast funding source(s)
Supported by the University of Nebraska, Lincoln Biomedical Research Enhancement Funds.

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