GenomeCAT statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

Tool usage distribution map
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Associated diseases

Associated diseases
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GenomeCAT specifications

Information


Unique identifier OMICS_14728
Name GenomeCAT
Software type Application/Script, Toolkit/Suite
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Windows
Programming languages Java, R
License GNU General Public License version 3.0
Computer skills Medium
Version 4.4.2
Stability Stable
Requirements
MySQL database
Maintained Yes

Subtools


  • CAT
  • CNVCAT

Download


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Versioning


No version available

Maintainers


  • person_outline Reinhard Ullmann <>
  • person_outline Katrin Tebel <>

Additional information


http://owww.molgen.mpg.de/~abt_rop/molecular_cytogenetics/GenomeCAT.html http://genomecat.github.io/genomeCATSuite/doc.html

Publication for GenomeCAT

GenomeCAT citation

library_books

Distribution of segmental duplications in the context of higher order chromatin organisation of human chromosome 7

2014
PMCID: 4092221
PMID: 24973960
DOI: 10.1186/1471-2164-15-537

[…] analysis, normalisation and annotation were done with feature extraction 10.5.1.1 (agilent, santa clara, usa) using the default settings. data visualisation and further analysis was performed with genomecat (tebel et al., manuscript in preparation; http://www.molgen.mpg.de/204904/genomecat) and the human epigenome browser [, ]., expression profiling was performed by next-generation sequencing […]


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GenomeCAT institution(s)
Max Planck Institute for Molecular Genetics, Berlin, Germany; Department of Biology, Chemistry and Pharmacy, Free University Berlin, Berlin, Germany; Institut für Radiobiologie der Bundeswehr in Verb mit der Universität Ulm, Munich, Germany
GenomeCAT funding source(s)
This work was supported by the Deutsche Forschungsgemeinschaft (UL342/ 2-1; UL342/2-2) and the German Ministry of Defense.

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