Genomedata pipeline

Genomedata specifications

Information


Unique identifier OMICS_02148
Name Genomedata
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Illumina, Life Technologies, Pacific Biosciences, Roche
Operating system Unix/Linux, Mac OS
Programming languages C, Python
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for Genomedata

Genomedata IN pipeline

2009
PMCID: 2636879
PMID: 19204800
DOI: 10.1371/journal.pone.0004429

[…] putative genes for which the p value was less than 0.05 were considered as differentially expressed., gene annotations in the tables were based on an initial search of tgd (http://www.ciliate.org/genomedata.shtml) with the gene id indicated by the roche-nimblegen array design. if a hit to a gene of known function was obtained, the annotation was used (e value is “0.0”). if a hit […]

Genomedata institution(s)
Department of Genome Sciences, University of Washington, Seattle, WA, USA

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