GenomeDiff statistics

info info

Citations per year

info

Tool usage distribution map

info info

Associated diseases

info

Popular tool citations

chevron_left Dot plot generation chevron_right
Want to access the full stats & trends on this tool?

GenomeDiff specifications

Information


Unique identifier OMICS_15908
Name GenomeDiff
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input data A natural language text.
Input format TXT
Output data Diagrams
Output format PDF
Operating system Unix/Linux, Windows
Programming languages Java
License GNU General Public License version 2.0
Computer skills Medium
Stability Stable
Maintained Yes

Download


download.png
sourceforge.png

Versioning


No version available

Documentation


Maintainer


  • person_outline Claus Wimmer

GenomeDiff citations

 (2)
library_books

Comparative genomics of the wheat fungal pathogen Pyrenophora tritici repentis reveals chromosomal variations and genome plasticity

2018
BMC Genomics
PMCID: 5913888
PMID: 29685100
DOI: 10.1186/s12864-018-4680-3

[…] st 10. Alignments were viewed in IGV [], Tablet version 1.16.09.06 [] and SAMtools Tview version 0.1.19-96b5f2294a [].Genome nucleotide pairwise distance was calculated with GenomeTools version 1.5.8 genomediff []. Andi [], with Kimura modelling and anchor pair significance of 0.05 was also used for calculating genomic distances and 1000-time bootstrap. Whole genome phylogenetic trees were constru […]

library_books

Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species

2014
BMC Genomics
PMCID: 4227064
PMID: 24984952
DOI: 10.1186/1471-2164-15-549

[…] tances between these four A. pullulans varieties and between four Saccharomyces species (for comparison purposes) were estimated by using two methods. First, the Kr distances were calculated with the genomediff software included in the GenomeTools library []. This alignment-free calculation produces Jukes-Cantor corrected divergences between the pairs of genomes as output. As a second approach, th […]


Want to access the full list of citations?

GenomeDiff reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review GenomeDiff