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GenomeDiff specifications


Unique identifier OMICS_15908
Name GenomeDiff
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input data A natural language text.
Input format TXT
Output data Diagrams
Output format PDF
Operating system Unix/Linux, Windows
Programming languages Java
License GNU General Public License version 2.0
Computer skills Medium
Stability Stable
Maintained Yes




No version available



  • person_outline Claus Wimmer

GenomeDiff citations


Comparative genomics of the wheat fungal pathogen Pyrenophora tritici repentis reveals chromosomal variations and genome plasticity

BMC Genomics
PMCID: 5913888
PMID: 29685100
DOI: 10.1186/s12864-018-4680-3

[…] st 10. Alignments were viewed in IGV [], Tablet version [] and SAMtools Tview version 0.1.19-96b5f2294a [].Genome nucleotide pairwise distance was calculated with GenomeTools version 1.5.8 genomediff []. Andi [], with Kimura modelling and anchor pair significance of 0.05 was also used for calculating genomic distances and 1000-time bootstrap. Whole genome phylogenetic trees were constru […]


Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species

BMC Genomics
PMCID: 4227064
PMID: 24984952
DOI: 10.1186/1471-2164-15-549

[…] tances between these four A. pullulans varieties and between four Saccharomyces species (for comparison purposes) were estimated by using two methods. First, the Kr distances were calculated with the genomediff software included in the GenomeTools library []. This alignment-free calculation produces Jukes-Cantor corrected divergences between the pairs of genomes as output. As a second approach, th […]

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