GenomeFlow

Constructs and investigates 3D genome models. GenomeFlow incorporates modeling with functional genomics data. It can serve for the recognition of chromosomal contacts by mapping raw Hi-C pair-end reads to a reference genome. This tool provides an overview of genome annotation tracks in the BED format in the 3D space, allowing users to annotate 3D models. It enables the identification of pairs of loci that are very close in 3D space.