GenomeJack protocols

GenomeJack specifications

Information


Unique identifier OMICS_02143
Name GenomeJack
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Biological technology Roche
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes

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GenomeJack IN pipelines

 (3)
2018
PMCID: 5766633
PMID: 29330501
DOI: 10.1038/s41598-017-18934-2

[…] serv sequence found in the genome of vero 0111 cells (genbank: ab935214) was performed using bwa bwa-mem46 with the illumina short reads of long-pcr fragments, followed by visualization with the genomejack viewer software (mitsubishi space software, tokyo, japan)., rna-seq short reads have been deposited in the public database (accession number: dra002256). dna-seq short reads of whole […]

2013
PMCID: 3623615
PMID: 23645984
DOI: 10.4137/GRSB.S11433

[…] mapping them on hg19, we identified totally 3,744 stringent chip-seq peaks that meet the criteria of fold enrichment ≥20 and fdr ≤1%. the genomic locations of the peaks were determined by using genomejack (fig. 2, panels a and b). we omitted the peaks located in non-coding genes (n = 157), those in intergenic regions (n = 1917), and redundant genes. finally, we identified 1,441 chip-seq […]

2013
PMCID: 3623615
PMID: 23645984
DOI: 10.4137/GRSB.S11433

[…] fold enrichment ≥20 and the false discovery rate (fdr) ≤1%, according to the methods described previously.12 next, we identified genomic locations of macs peaks by importing the processed data into genomejack v1.3, a novel genome viewer for ngs platforms developed by mitsubishi space software (www.mss.co.jp/businessfield/bioinformatics). based on refseq id, macs peaks were categorized […]

GenomeJack institution(s)
Mitsubishi Space Software Company Limited, Tokyo, Japan

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