GenomeJack specifications

Information


Unique identifier OMICS_02143
Name GenomeJack
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Biological technology Roche
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes

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GenomeJack citations

 (2)
2013
PMCID: 3825669

[…] bp from peaks to genes. next, we identified more detailed genomic locations of macs peaks by importing the processed data composed of individual peaks one by one into a novel genome viewer named genomejack v1.4 (mitsubishi space software).15 the genomic locations of the peaks were categorized into the following: the promoter region defined by the location within 5,000 bp upstream from the 5′ […]

2013
PMCID: 3623615

[…] mapping them on hg19, we identified totally 3,744 stringent chip-seq peaks that meet the criteria of fold enrichment ≥20 and fdr ≤1%. the genomic locations of the peaks were determined by using genomejack (fig. 2, panels a and b). we omitted the peaks located in non-coding genes (n = 157), those in intergenic regions (n = 1917), and redundant genes. finally, we identified 1,441 chip-seq […]

GenomeJack institution(s)
Mitsubishi Space Software Company Limited, Tokyo, Japan

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