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GenomeMatcher | A graphical user interface for DNA sequence comparison

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A standalone to visualize similarities between two DNA sequences. GenomeMatcher executes BLAST and MUMmer, and the detected similarities are displayed in two-dimensional and parallel views with similarity values indicated by color. It is used for in-depth comparative analysis of two sequences. This standalone is useful for detecting similarities in DNA sequences ranging in size from a few to sub-Giga bases.

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GenomeMatcher classification

GenomeMatcher specifications

Unique identifier:
OMICS_00936
Interface:
Graphical user interface
Input data:
Two DNA sequences
Output data:
Graphical view of identity score of blastn comparison
Operating system:
Mac OS
License:
Other
Version:
2.18
Maintained:
Yes
Software type:
Application/Script
Restrictions to use:
Academic or non-commercial use
Input format:
DDBJ/GenBank, single FASTA, plain text
Output format:
PDF, TIFF
Programming languages:
Objective-C
Computer skills:
Medium
Stability:
Stable

GenomeMatcher distribution

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GenomeMatcher support

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Publications

Institution(s)

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, Japan

Funding source(s)

This work was funded by Grant-in-Aids for Scientific Research from the Ministry of Education, Culture, Sports, Science and Technology, Japan.

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