GenomeRunner statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Regulatory variant prediction chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

GenomeRunner specifications

Information


Unique identifier OMICS_11439
Name GenomeRunner
Interface Web user interface
Restrictions to use None
Programming languages Python
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Mikhail G. Dozmorov <>

Publications for GenomeRunner

GenomeRunner in publications

 (9)
PMCID: 5676057
PMID: 28948711
DOI: 10.1111/acel.12681

[…] of sex‐common and sex‐divergent differences with aging., enrichment of admcgs in enhancer regions was also performed against encode datasets of mouse brain tissue enhancer locations using genomerunner (dozmorov et al., ) (fig. c,d). regions associated with active transcription, h3k4me3, h3k27ac, and polii, were generally under‐represented as a location for admcgs, regardless […]

PMCID: 5390918
PMID: 28469415
DOI: 10.1177/1177932216687545

[…] and statistical methods for the integrative analysis of “omics” data and focuses on precision medicine approaches. he has developed a bioinformatics program and a biostatistics approach, genomerunner (http://www.integrativegenomics.org/), to automate genome and epigenome exploration. he uses functional epigenomic data from the encode and roadmap epigenomics projects to understand […]

PMCID: 5011241
PMID: 27635400
DOI: 10.1155/2016/8642703

[…] diseases []), or after treatment [], as we predicted [] on the basis of the central limit theorem., as an unexpected clever generalization of this mainstream approach, the authors of web server genomerunner [] proposed to evaluate the difference between snps in addition to the widely accepted notion of assessments of the similarity between them. in this active field of research, the new […]

PMCID: 4848848
PMID: 27127542
DOI: 10.1186/s13148-016-0212-7

[…] [] (fig. ). given the large volumes of genome annotation data, the regulatory enrichment analysis methods are less well developed than functional enrichment analysis methods. however, tools like genomerunner [], enrichr [], and goshifter [] have been successfully applied to the interpretation of dmrs identified with 450k technology in studies of autoimmunity [, ] and aging [, ]. […]

PMCID: 4699364
PMID: 26699738
DOI: 10.1186/s13059-015-0842-7

[…] non-permuted data. the permutation p values were then calculated from the corresponding z-scores., in the phase 2 bioinformatics analyses, we used a database of genomic annotations assembled in the genomerunner project [] to examine enrichment of meqtls in selected annotation classes. these included (1) individual disease-associated snp sets from the manually curated nhgri catalog of published […]


To access a full list of publications, you will need to upgrade to our premium service.

GenomeRunner institution(s)
Department of Biostatistics, Virginia Commonwealth University, Richmond, VA, USA; Department of Arthritis and Clinical Immunology, Oklahoma Medical Research Foundation, Okla-homa City, OK, USA; Department of Biochemistry and Molecular Biology, University of Oklahoma Health Sciences Cen-ter, Oklahoma City, OK, USA
GenomeRunner funding source(s)
This work was supported by the Virginia Commonwealth University start-up fund, the National Institute of Arthritis and Musculoskeletal and Skin Diseases (a subaward from grant # P30 AR053483), an Institutional Development Award (IDeA) from the National Institute of General Medical Sciences (a subaward from grant # P30 GM103510), and the National Science Foundation (Grant # ACI-1345426) for partial funding of this work.

GenomeRunner reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review GenomeRunner