Genomic databases | Genome annotation

Genomic data steps

Most recent bioinformatics tools

SKB
Dataset

SKB Shewanella knowledgebase

Facilitates manual curation of all sequenced Shewanella genomes. SKB is a…

Facilitates manual curation of all sequenced Shewanella genomes. SKB is a multi-genome annotation environment consisting of ortholog and genome editors. It combines many independent data sources for…

SGCEdb
Dataset

SGCEdb

Accumulates information of the putative proteins. SGCEdb is a database that…

Accumulates information of the putative proteins. SGCEdb is a database that offers a variety of genomes and heterogeneous experiment methodologies. This online resource is separated into two distinct…

RGKbase
Dataset

RGKbase Rice Genome Knowledgebase

Provides molecular information for deciphering mechanisms on rice variety.…

Provides molecular information for deciphering mechanisms on rice variety. RGKbase is a database that adopts parallel annotation pipelines for repetitive sequences, protein-coding genes, noncoding…

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PMPj-Blast
Dataset

PMPj-Blast

Offers data from were obtained from PMPj. PMPj-Blast is a database of…

Offers data from were obtained from PMPj. PMPj-Blast is a database of nucleotide sequences of Expressed Sequence tags (ESTs), cDNAs and oligo DNA microarray probes for Lotus japonicus and Arabidopsis…

Most popular analytical software and databases

EuMicrobedbLite
Dataset

EuMicrobedbLite

A light weight comprehensive genome resource and sequence analysis platform for…

A light weight comprehensive genome resource and sequence analysis platform for oomycete organisms. EuMicrobedbLite is a successor of the VBI Microbial Database (VMD) that was built using the Genome…

dbEMT
Dataset

dbEMT

A literature-based gene resource for exploring epithelial-mesenchymal…

A literature-based gene resource for exploring epithelial-mesenchymal transition (EMT)-related human genes. dbEMT includes literature data, clinical relevant variants, gene expression profiles and…

CoReCG
Dataset

CoReCG Colon Rectal Cancer Gene Database

Contains 2056 colon-rectal cancer genes information involved in distinct…

Contains 2056 colon-rectal cancer genes information involved in distinct colorectal cancer stages sourced from published literature with an effective knowledge based information retrieval system.…

GCGene
Dataset

GCGene Gastric Cancer Gene database

A literature-based database with comprehensive annotations supported by a…

A literature-based database with comprehensive annotations supported by a user-friendly website. In the current release, we have collected 1,815 unique human genes including 1,678 protein-coding and…

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