GenomeScan statistics

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Citations per year

Number of citations per year for the bioinformatics software tool GenomeScan
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Tool usage distribution map

This map represents all the scientific publications referring to GenomeScan per scientific context
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Associated diseases

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Protocols

GenomeScan specifications

Information


Unique identifier OMICS_07792
Name GenomeScan
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Chris Burge

Publications for GenomeScan

GenomeScan citations

 (44)
library_books

The fungus Aspergillus niger consumes sugars in a sequential manner that is not mediated by the carbon catabolite repressor CreA

2018
Sci Rep
PMCID: 5923239
PMID: 29703914
DOI: 10.1038/s41598-018-25152-x

[…] in a spectrophotometer (Biochrom Libra S22). The RNA quality was analyzed with an Agilent 2100 bioanalyzer using a RNA6000 LabChip kit (Agilent Technology). Microarray hybridization was performed at GenomeScan (Leiden, The Netherlands). Microarray data was analyzed using Affymetrix Expression Console software v1.4.1.46 with the normalized values in linear scale. The probe intensities were normali […]

library_books

Draft Genome Sequence of the Basidiomycete White Rot Fungus Phlebia centrifuga

2018
Genome Announc
PMCID: 5887033
PMID: 29622620
DOI: 10.1128/genomeA.01414-17

[…] gies). The concentration and quality of the DNA were determined using a Qubit fluorometer (Life Technologies) and 0.6% agarose gel, respectively. Genome and transcriptome sequencing were performed at GenomeScan.The DNA was fragmented using a Focused-ultrasonicator (Covaris). The NEBNext Ultra DNA library prep kit and NEBNext Ultra directional RNA library prep kit for Illumina (catalog numbers E737 […]

library_books

Genome assembly of the Pink Ipê (Handroanthus impetiginosus, Bignoniaceae), a highly valued, ecologically keystone Neotropical timber forest tree

2017
GigaScience
PMCID: 5905499
PMID: 29253216
DOI: 10.1093/gigascience/gix125

[…] a, Erythranthe guttata, Solanum lycopersicum, Solanum tuberosum, Populus trichocarpa, and Vitis vinifera. Gene structures were predicted by homology-based predictors, FGENESH++, FGENESH_EST [, ], and GenomeScan []. Gene predictions were improved by Program to Assemble Spliced Alignment (PASA, RRID:SCR_014656) [], including adding Untranslated Regions (UTRs), correcting splicing, and adding alterna […]

library_books

Comprehensive transcriptome analysis of fluid shear stress altered gene expression in renal epithelial cells

2017
PMCID: 5765508
PMID: 29044509
DOI: 10.1002/jcp.26222

[…] –Aldrich; #T9424) and purified using Nucleospin RNA Clean‐up (Macherey‐Nagel, Düren, Germany; #740948) according to manufacturer's protocols. Next generation sequencing of mRNA was done by ServiceXS (GenomeScan, Leiden, The Netherlands) using the Illumina® HiSeq 2500 platform (San Diego, CA, USA). Illumina mRNA‐Seq Sample Prep Kit was used to process the samples according to the manufacturer's pro […]

library_books

Genome Sequence of the Thermophilic Biomass Degrading Fungus Malbranchea cinnamomea FCH 10.5

2017
Genome Announc
PMCID: 5604768
PMID: 28818895
DOI: 10.1128/genomeA.00779-17

[…] 1.4 M NaCl) and purified from the supernatant by a combination of phenol-chloroform extraction and isopropanol precipitation () and a DNeasy Plant minikit (Qiagen).Genome sequencing was performed in GenomeScan facilities. The NEBNext Ultra DNA library prep kit for Illumina (catalog no. NEB E7370S/L) was used according to the manufacturer’s protocol for library preparation. Quality and yield after […]

library_books

Conclusive evidence for hexasomic inheritance in chrysanthemum based on analysis of a 183 k SNP array

2017
BMC Genomics
PMCID: 5547472
PMID: 28784083
DOI: 10.1186/s12864-017-4003-0

[…] Library preparation and sequencing was carried out by GenomeScan B.V. (Leiden, the Netherlands). Library preparation was done using the strand-specific NEBNext Ultra Directional RNA Library Prep kit for Illumina sequencing (New England Biolabs, Ipswich, […]


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GenomeScan institution(s)
Department of Mathematics Stanford University, Stanford CA, USA

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